View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10966_low_4 (Length: 438)
Name: NF10966_low_4
Description: NF10966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10966_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 9680475 - 9680063
Alignment:
| Q |
18 |
aagaaattcctttgcagccttaactcactaagtgaaattgctccttctatttcataaggaatgcttccattaagcttgttagaactcaaatcaagaatat |
117 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| ||| |
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| T |
9680475 |
aagaaattcctttgtagcctcaactcactaagtgaaattgctccttctatttcataaggaatgcttccattaagcttgttatcacttagatcaagagtat |
9680376 |
T |
|
| Q |
118 |
acaaagatttaagctctcttatactcactggaatagaacccgaaatattgtttgcagaaaaattcaaaacttgcaaacttctaagaccaccaatgccaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9680375 |
acaaagatttaagctctcttatactcactggaatagaacccgaaatattgtttgcagaaaaattcaaaacttgcaaacttctaagaccaccaatgccaaa |
9680276 |
T |
|
| Q |
218 |
tggaatttgaccataaaatctattagaagaaagtttcaatatctctaaattgttcaattcaccaatccaatgtggaatgctcccattgaaataattccct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9680275 |
tggaatttgaccataaaatctattagaagaaagtttcaatatctctaaattgttcaattcaccaatccaatgtggaatgctcccattgaaataattccct |
9680176 |
T |
|
| Q |
318 |
tgcaaacttagtaatgtgcatgaggcgagtctttgtatcgactctggaattatatcagtaagaagattatcactgaaatcaatcaacttcaaaagcaaac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9680175 |
tgcaaacttagtaatgtgcatgaggcgagtctttgtatcgactctggaattacatcagtaagaagattatcactgaaatcaatcaacttcaaaagcaaac |
9680076 |
T |
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| Q |
418 |
agtttcctatgct |
430 |
Q |
| |
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| T |
9680075 |
agtttcctatgct |
9680063 |
T |
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Back To:
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Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 33 - 236
Target Start/End: Original strand, 27379147 - 27379350
Alignment:
| Q |
33 |
agccttaactcactaagtgaaattgctccttctatttcataaggaatgcttccattaagcttgttagaactcaaatcaagaatatacaaagatttaagct |
132 |
Q |
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||||| || |||| |||||||||||| ||||||| |||| |||||||||||||||||||||||||| ||||||||||| ||| |||||||||| || | |
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| T |
27379147 |
agcctcaattcaccaagtgaaattgcaccttctaattcaaaaggaatgcttccattaagcttgttatcactcaaatcaacaatgcacaaagatttgagtt |
27379246 |
T |
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| Q |
133 |
ctcttatactcactggaatagaacccgaaatattgtttgcagaaaaattcaaaacttgcaaacttctaagaccaccaatgccaaatggaatttgaccata |
232 |
Q |
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| | ||||| || |||| |||||| || | || ||| | ||| | |||| | | || |||||| |||||||||||||| || ||||||||| |||| | |
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| T |
27379247 |
cgcctataccaacaggaacagaaccagagaaatagttggtagacatattccagattttcaaactactaagaccaccaatatcagatggaatttcaccaga |
27379346 |
T |
|
| Q |
233 |
aaat |
236 |
Q |
| |
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|||| |
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| T |
27379347 |
aaat |
27379350 |
T |
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