View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10966_low_5 (Length: 396)
Name: NF10966_low_5
Description: NF10966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10966_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 386
Target Start/End: Complemental strand, 47625290 - 47624912
Alignment:
| Q |
8 |
cagcacagacaagagggagaaagattcttcagagaggtgcctgttgaagatcagctctatagttattcctccttcactggagctctccaaggtaccaatt |
107 |
Q |
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| T |
47625290 |
cagcacagacaagagggagaaagattcttcagagaggtgcctgttgaagatcagctctatagttattcctccttcactggagctctccaaggtaacaatt |
47625191 |
T |
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| Q |
108 |
accttcaatattaagagatgactctgtactctcagtggcatgacatgattttactatagctgtttaagctgctagattattgttgtttagtgtttatatg |
207 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625190 |
accttcaatattaagagatgactctgtactgtcagtggcatgacatgattttactatagctgtttaagctgctagattattgttgtttagtgtttatatg |
47625091 |
T |
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| Q |
208 |
tctgtgcaaattattcaagttaactctgctgcctgcaagttttgctgtggtagacaatgatctaaatatcgttttttggggtattgcaatgtggaaaaca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47625090 |
tctgtgcaaattattcaagttaactctgctgcctgcaagttttgctgtggtagacaatgatctaaatatcgttttttggggtattgcaatgtggaaaaca |
47624991 |
T |
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| Q |
308 |
aaacaaactatgtcatgaccatgacatttcataactgtactataaagtttcatgcaatggtttatacatgtgctctctg |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47624990 |
aaacaaactatgtcatgaccatgacatttcataactgtactataaagtttcatgcaatggtttatacatgtgctctctg |
47624912 |
T |
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