View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10966_low_6 (Length: 396)
Name: NF10966_low_6
Description: NF10966
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10966_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 36464081 - 36463714
Alignment:
| Q |
18 |
gattcgtgaacgagtttaacagcttctttaagcaatttctcagaccctaaattaagcaccctcttgatcttccaaatcaaatgaatcggtgaatgcgagc |
117 |
Q |
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| T |
36464081 |
gattcgtgaacgagtttaacagcttctttaagcaatttctcagaccctaaattaagcaccctcttgatcttccaaatcaaatgaatcggtgaatgcgagc |
36463982 |
T |
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| Q |
118 |
gtattgcacttatctcggaagctttgtcgaacgccgacaaaagtggtggcaaaggtttagataaatccaaacaacaaggatcatagccaagtgaaacttt |
217 |
Q |
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| T |
36463981 |
gtattgcacttatctcggaagctttgtcgaacgccgacaaaagtggtggcaaaggtttagataaatccaaacaacaaggatcatagccaagtgaaacttt |
36463882 |
T |
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| Q |
218 |
acacacaatttcaaatgtgagtctcctcaaaacatcttgcatgtcaataacatggtttccatcagaagccaattcaagcaatggaataagtctttgttga |
317 |
Q |
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| T |
36463881 |
acacacaatttcaaatgtgagtctcctcaaaacatcttgcatgtcaataacatggtttccatcagaagccaattcaagcaatggaataagtctttgttga |
36463782 |
T |
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| Q |
318 |
acttcatcttcaagtgtctttgcaacaaagtctttgagagaccttgttgtgaattcgtggctgcctat |
385 |
Q |
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| T |
36463781 |
acttcatcttcaagtgtctttgcaacaaagtctttgagagaccttgttgtgaattcatggctacctat |
36463714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 242
Target Start/End: Complemental strand, 36474172 - 36474044
Alignment:
| Q |
117 |
cgtattgcacttatctcggaagctttgtcgaacgccgacaaaagtggtggcaaaggtttagata---aatccaaacaacaaggatcatagccaagtgaaa |
213 |
Q |
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| T |
36474172 |
cgtatggcgcttatctctaaagctttatcgaacgccgccaaatgaggtagtaaaggtttaactattaaatccaaacaacaagtatcataaccaagtgaaa |
36474073 |
T |
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| Q |
214 |
ctttacacacaatttcaaatgtgagtctc |
242 |
Q |
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| T |
36474072 |
ttgtacatgcaatttcaaaggtgagtctc |
36474044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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