View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10967_high_1 (Length: 559)

Name: NF10967_high_1
Description: NF10967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10967_high_1
NF10967_high_1
[»] chr4 (5 HSPs)
chr4 (16-552)||(55448545-55449089)
chr4 (364-418)||(624548-624600)
chr4 (387-431)||(28815700-28815744)
chr4 (387-415)||(31187493-31187521)
chr4 (364-415)||(37868520-37868569)
[»] chr8 (2 HSPs)
chr8 (52-163)||(33522307-33522419)
chr8 (364-418)||(26217859-26217911)
[»] chr5 (3 HSPs)
chr5 (364-429)||(25460719-25460783)
chr5 (364-418)||(18890394-18890448)
chr5 (364-431)||(6167280-6167345)
[»] scaffold0003 (1 HSPs)
scaffold0003 (370-429)||(315723-315780)
[»] chr6 (1 HSPs)
chr6 (363-418)||(6196299-6196352)
[»] chr3 (2 HSPs)
chr3 (364-418)||(40739161-40739213)
chr3 (364-410)||(34102134-34102180)
[»] scaffold0006 (1 HSPs)
scaffold0006 (383-429)||(60336-60382)
[»] chr2 (2 HSPs)
chr2 (391-429)||(43398402-43398440)
chr2 (364-410)||(43214422-43214465)
[»] chr1 (2 HSPs)
chr1 (364-432)||(5863040-5863106)
chr1 (391-420)||(35283594-35283623)


Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 16 - 552
Target Start/End: Original strand, 55448545 - 55449089
Alignment:
Q  16 aaaaatgacaatatatttgttctgctcattatcattagttggtttggcttttatggttgataatggccaatcagcacttgcacatttgattcctgcatgc 115  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55448545 aaaaattacaatatatttgttctgctcattatcattagttggtttggcttttatggttgataatggccaatcagcacttgcacatttgattcctgcatgc 55448644  T
Q  116 caattctctttccactgcaaagacaatgatacaaaattaacatgcatcttatttttcattgctcataattcaagttcaatttttggtgaattgagatcta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55448645 caattctctttccactgcaaagacaatgatacaaaattaacatgcatcttatttttcattgctcataattcaagttcaatttttggtgaattgagatcta 55448744  T
Q  216 tcaatagtagagcaaagcatccggtttgtaatgaataaataaatacaacattaaacaagctagataagactcactggtaagatgtac-------taggat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||       ||||||    
T  55448745 tcaatagtagagcaaagcatccggtttgtaatgaataaataaatacaacattaaacaagctagataagactaactggtaagatgtactaggaattaggat 55448844  T
Q  309 aataaacaaacataagaaaaatcattaattaacaaatttcgaacctca-acagcttacacctcacttctccacgttttaaaaatgtgtgagctctaacca 407  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55448845 aataaacaaacataagaaaaatcattaattaacatatttcgaatctcagacagcttacacctcacttctccacgttttaaaaatgtgtgagctctaacca 55448944  T
Q  408 ctaaactacttaataaagaaaatataaagtaaacaactaaattttgatagcaccatacacacatatgtatatataccttgaaccacacagccagatgctc 507  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55448945 ctagactacttaataaagaaaatataaagtaaacaactaaattttgatagcaccatacacacatatgtatatataccttgaaccacacagccagatgctc 55449044  T
Q  508 atccacctccaaccattcagaaaatgatagttctgcttcttctct 552  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  55449045 atccacctccaaccattcagaaaatgatagttctgcttcttctct 55449089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 624548 - 624600
Alignment:
Q  364 acacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaactactt 418  Q
    ||||| ||||||||||| |||  ||||||||||||||||||||||||||||||||    
T  624548 acaccccacttctccacattt--aaaatgtgtgagctctaaccactaaactactt 624600  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 431
Target Start/End: Original strand, 28815700 - 28815744
Alignment:
Q  387 aaaatgtgtgagctctaaccactaaactacttaataaagaaaata 431  Q
    |||||||||||||||||||||||| ||||||| | ||| ||||||    
T  28815700 aaaatgtgtgagctctaaccactagactacttgacaaaaaaaata 28815744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 415
Target Start/End: Complemental strand, 31187521 - 31187493
Alignment:
Q  387 aaaatgtgtgagctctaaccactaaacta 415  Q
    |||||||||||||||||||||||||||||    
T  31187521 aaaatgtgtgagctctaaccactaaacta 31187493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 415
Target Start/End: Complemental strand, 37868569 - 37868520
Alignment:
Q  364 acacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaacta 415  Q
    |||||||||||||||||  ||  ||| |||||||||||||||||||||||||    
T  37868569 acacctcacttctccacaatt--aaattgtgtgagctctaaccactaaacta 37868520  T

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Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 52 - 163
Target Start/End: Original strand, 33522307 - 33522419
Alignment:
Q  52 agttggtttggcttttatggttgataatggccaatcagcacttgcacatttgattcctgcatgccaattctctttccactgcaaagacaatgataca-aa 150  Q
    ||||||||||||||| |   |||||||||||||||||||  ||||||||||||| ||||||| ||| ||| ||| ||||||||||||||| || ||| ||    
T  33522307 agttggtttggctttcacaattgataatggccaatcagccattgcacatttgatgcctgcattccacttcccttcccactgcaaagacaaagacacacaa 33522406  T
Q  151 attaacatgcatc 163  Q
    |||||||||||||    
T  33522407 attaacatgcatc 33522419  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 26217859 - 26217911
Alignment:
Q  364 acacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaactactt 418  Q
    ||||||||||||||||| |||  ||||||||||| ||| ||||||||||||||||    
T  26217859 acacctcacttctccacattt--aaaatgtgtgatctccaaccactaaactactt 26217911  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 25460783 - 25460719
Alignment:
Q  364 acacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaactacttaataaagaaaa 429  Q
    ||||| ||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||||| ||||    
T  25460783 acaccccacttctccacattt-aaaaatgtgtgagctctaaccactagactacttgataaaaaaaa 25460719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 364 - 418
Target Start/End: Original strand, 18890394 - 18890448
Alignment:
Q  364 acacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaactactt 418  Q
    ||||| ||||||||||| ||| |||||||||||| |||||||||||| |||||||    
T  18890394 acaccccacttctccacatttaaaaaatgtgtgacctctaaccactagactactt 18890448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 364 - 431
Target Start/End: Original strand, 6167280 - 6167345
Alignment:
Q  364 acacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaactacttaataaagaaaata 431  Q
    ||||||||||||||||| |||  ||||||||||||||||| ||||||  |||||||| ||| ||||||    
T  6167280 acacctcacttctccacattt--aaaatgtgtgagctctagccactaggctacttaacaaaaaaaata 6167345  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 429
Target Start/End: Original strand, 315723 - 315780
Alignment:
Q  370 cacttctccacgttttaaaaatgtgtgagctctaaccactaaactacttaataaagaaaa 429  Q
    ||||||||||| |||  ||||||||||| |||||||||||||||||||| ||||| ||||    
T  315723 cacttctccacattt--aaaatgtgtgaactctaaccactaaactacttgataaaaaaaa 315780  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 6196352 - 6196299
Alignment:
Q  363 tacacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaactactt 418  Q
    |||| |||||||||||||||||  |||||||||||||| ||||||||||| |||||    
T  6196352 tacatctcacttctccacgttt--aaaatgtgtgagctttaaccactaaattactt 6196299  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 418
Target Start/End: Complemental strand, 40739213 - 40739161
Alignment:
Q  364 acacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaactactt 418  Q
    |||||||||||||||| ||||  ||||||||||||||||| |||||| |||||||    
T  40739213 acacctcacttctccatgttt--aaaatgtgtgagctctagccactagactactt 40739161  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 410
Target Start/End: Original strand, 34102134 - 34102180
Alignment:
Q  364 acacctcacttctccacgttttaaaaatgtgtgagctctaaccacta 410  Q
    |||||||| |||||||| ||| |||||||||||||||| ||||||||    
T  34102134 acacctcatttctccacatttaaaaaatgtgtgagctccaaccacta 34102180  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 429
Target Start/End: Original strand, 60336 - 60382
Alignment:
Q  383 tttaaaaatgtgtgagctctaaccactaaactacttaataaagaaaa 429  Q
    ||||||||||||||| ||||||||||||| |||||| ||||| ||||    
T  60336 tttaaaaatgtgtgaactctaaccactaagctacttgataaaaaaaa 60382  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 391 - 429
Target Start/End: Original strand, 43398402 - 43398440
Alignment:
Q  391 tgtgtgagctctaaccactaaactacttaataaagaaaa 429  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  43398402 tgtgtgagctctaaccactagactacttgataaagaaaa 43398440  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 410
Target Start/End: Original strand, 43214422 - 43214465
Alignment:
Q  364 acacctcacttctccacgttttaaaaatgtgtgagctctaaccacta 410  Q
    |||||||||||||||||||||   || ||||||||||||||||||||    
T  43214422 acacctcacttctccacgttt---aattgtgtgagctctaaccacta 43214465  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 432
Target Start/End: Original strand, 5863040 - 5863106
Alignment:
Q  364 acacctcacttctccacgttttaaaaatgtgtgagctctaaccactaaactacttaataaagaaaatat 432  Q
    |||||||||||||||  || || |||||||||||| ||||||||||| ||||||| | ||| |||||||    
T  5863040 acacctcacttctcc--gtatttaaaatgtgtgagttctaaccactagactacttgacaaaaaaaatat 5863106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 420
Target Start/End: Original strand, 35283594 - 35283623
Alignment:
Q  391 tgtgtgagctctaaccactaaactacttaa 420  Q
    ||||||||||||||||||||||||||||||    
T  35283594 tgtgtgagctctaaccactaaactacttaa 35283623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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