View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10967_low_2 (Length: 539)
Name: NF10967_low_2
Description: NF10967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10967_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 1092690 - 1093210
Alignment:
| Q |
1 |
atcacatttatttctttactatttgtgtaattttaatacattggtcttctttgcccagtctattttaatgttctctcctgtccaattctataggtagtaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1092690 |
atcacatttatttctttactatttgtgtaattttaatacattggtcttctttgcccagtctattttaatgttctctcctgtccaattctataggtagtaa |
1092789 |
T |
|
| Q |
101 |
ttccatgctttgttagagtcataatacacttctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccacta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1092790 |
ttccatgctttgttagagtcataatacacttccattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccacta |
1092889 |
T |
|
| Q |
201 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1092890 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaaaattccacgcat |
1092989 |
T |
|
| Q |
301 |
gttccatactgggaagatggaaatctccgaagactcagctagtgagtccaagttgagtattcccatcatagacctcaaagacatacacaacaatccagct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1092990 |
gttccatactgggaagatggaaatctccgaagactcagctagtgagtccaagttgagtattcccatcatagacctcaaagacatacacaacaatccagct |
1093089 |
T |
|
| Q |
401 |
cgacgtgtagaggtaattggccaaattcaaagtgcatgccatgagtggggattttttcagataattaatcatgaaattcccattaatgtcttggatgaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1093090 |
cgacgtgtagaggtaattggccaaattcaaagtgcatgccatgagtggggattttttcagataattaatcatgaaattcccattaatgtcttggatgaaa |
1093189 |
T |
|
| Q |
501 |
tgattgatggaattagtaagt |
521 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1093190 |
tgattgatggaattagtaagt |
1093210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 353 - 511
Target Start/End: Original strand, 26395976 - 26396134
Alignment:
| Q |
353 |
ttgagtattcccatcatagacctcaaagacatacacaacaatccagctcgacgtgtagaggtaattggccaaattcaaagtgcatgccatgagtggggat |
452 |
Q |
| |
|
|||||| ||||||||||||||||||| | ||| ||| |||||||||| ||| | ||||||||| | ||||||| || |||||| | |||||||||| |
|
|
| T |
26395976 |
ttgagtgttcccatcatagacctcaagggcattcacgttgatccagctcgtcgtattgaggtaattagtcaaattcgaactgcatgtaaggagtggggat |
26396075 |
T |
|
| Q |
453 |
tttttcagataattaatcatgaaattcccattaatgtcttggatgaaatgattgatgga |
511 |
Q |
| |
|
||||||| | ||||||||||||||||||||| ||| |||||||||||| |||||||| |
|
|
| T |
26396076 |
tttttcaagtgattaatcatgaaattcccatttgtgtattggatgaaatgcttgatgga |
26396134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 360 - 514
Target Start/End: Original strand, 26168372 - 26168526
Alignment:
| Q |
360 |
ttcccatcatagacctcaaagacatacacaacaatccagctcgacgtgtagaggtaattggccaaattcaaagtgcatgccatgagtggggattttttca |
459 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| |||| ||||| || |||||| |||||| | || |||||| | ||||||||||||||||| |
|
|
| T |
26168372 |
ttcccatcatagacctcaaagacatccacattgatccctctcgtcgtgttgaagtaattaaccaaatccgaaccgcatgcaaggagtggggattttttca |
26168471 |
T |
|
| Q |
460 |
gataattaatcatgaaattcccattaatgtcttggatgaaatgattgatggaatt |
514 |
Q |
| |
|
| |||||||||| |||||||||| |||| |||||||||| |||||||||||| |
|
|
| T |
26168472 |
agtgattaatcatggaattcccattgatgtattggatgaaacaattgatggaatt |
26168526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 352 - 514
Target Start/End: Complemental strand, 25225018 - 25224856
Alignment:
| Q |
352 |
gttgagtattcccatcatagacctcaaagacatacacaacaatccagctcgacgtgtagaggtaattggccaaattcaaagtgcatgccatgagtgggga |
451 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| |||| |||| |||| ||||| || |||||| |||||||| | |||||| | |||| |||| |
|
|
| T |
25225018 |
gttgagtgttcccatcatagacttcaaagacatccacattgatccttctcgtcgtgttgaagtaattaaccaaattcgatccgcatgcaaggagtaggga |
25224919 |
T |
|
| Q |
452 |
ttttttcagataattaatcatgaaattcccattaatgtcttggatgaaatgattgatggaatt |
514 |
Q |
| |
|
|||||||| | |||||||||| |||||| |||||||| |||||||||| ||| |||||||| |
|
|
| T |
25224918 |
ttttttcaagtgattaatcatggaattccaattaatgtattggatgaaacaattaatggaatt |
25224856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 303
Target Start/End: Complemental strand, 25225169 - 25225067
Alignment:
| Q |
201 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat |
300 |
Q |
| |
|
||||||| ||||||||| | | |||||||||||||||||||||||| ||| | ||||| | |||| | ||||| ||||||| | ||||| || ||||| |
|
|
| T |
25225169 |
attccacatatgatagaaatgttgaagtgaaagcttttgatgattcgaaacttggtgttagaggtcttatggagcgtggggtgacaaagatcccgcgcat |
25225070 |
T |
|
| Q |
301 |
gtt |
303 |
Q |
| |
|
||| |
|
|
| T |
25225069 |
gtt |
25225067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 26168213 - 26168315
Alignment:
| Q |
201 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat |
300 |
Q |
| |
|
||||||| ||||||||| | | |||| |||||| |||||||||||||||| | ||||| | |||| | ||||| ||||||| | ||||| |||||||| |
|
|
| T |
26168213 |
attccacatatgatagaaatgatgaattgaaagtttttgatgattcaaaacttggtgtaagaggtcttatggagcgtggggtgacaaagatcccacgcat |
26168312 |
T |
|
| Q |
301 |
gtt |
303 |
Q |
| |
|
||| |
|
|
| T |
26168313 |
gtt |
26168315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 303
Target Start/End: Original strand, 26395846 - 26395926
Alignment:
| Q |
223 |
tgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgtt |
303 |
Q |
| |
|
|||||||||||||||||| || |||||||| ||||| | |||| | |||||| |||||| | ||||| ||||||||||| |
|
|
| T |
26395846 |
tgaagtgaaagcttttgaagaatcaaaagttggtgtaagaggtcttgtggagagtggggtaacaaagatcccacgcatgtt |
26395926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 128 - 513
Target Start/End: Original strand, 29462555 - 29462938
Alignment:
| Q |
128 |
acttctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaag |
227 |
Q |
| |
|
|||| |||||||||||||||| ||| |||| |||||||| ||||| ||||||||||| ||||| ||| | ||| |||||||||||||||||| |||| |
|
|
| T |
29462555 |
acttttattctggtgttgtttg--cctatcaatatggtggtagaaaactcaaaccaattaaaggaatccagtgatttcacttatgatagagaagccgaag |
29462652 |
T |
|
| Q |
228 |
tgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttccatactgggaagatggaaatctc |
327 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||| ||||| |||||||||| |
|
|
| T |
29462653 |
ttaaagcttttgatgattcaaaagttggtgtcaaaggtttggtggattctggggtgtcaaagattccacgcatgttctacactaggaagttggaaatctc |
29462752 |
T |
|
| Q |
328 |
cgaagactcagctagtgagtccaagttgagtattcccatcatagacctcaaagacatacacaacaatccagctcgacgtgtagaggtaattggccaaatt |
427 |
Q |
| |
|
||| | |||||||||| ||||||||||||||||| ||| ||||||||||||| ||||||| ||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
29462753 |
tgaaagcacagctagtgactccaagttgagtattcctatcgtagacctcaaagatatacacatcaatccagctcagcgtgtagaggtaattgaccaaatt |
29462852 |
T |
|
| Q |
428 |
caaagtgcatgccatgagtggggattttttcagataattaatcatgaaattcccattaatgtcttggatgaaatgattgatggaat |
513 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
29462853 |
cgaagtgcatgccatgagtggggattttttcaggtgattaatcatgaaattcctattattgtcttggatgaaatgattgatggaat |
29462938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 132 - 513
Target Start/End: Original strand, 19890171 - 19890550
Alignment:
| Q |
132 |
ctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaa |
231 |
Q |
| |
|
||||| ||||||||||| |||||||| |||||||| ||||||||||| || ||||||||| | ||||||||||||||||||||| || | |||||||| |
|
|
| T |
19890171 |
ctattttggtgttgtttt--cctctcaatatggtggtaaaaaacacaaatcagttagaggaatctactaattccacttatgatagaaaaacagaagtgaa |
19890268 |
T |
|
| Q |
232 |
agcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttccatactgggaagatggaaatctccgaa |
331 |
Q |
| |
|
| ||||||||||||||||| ||||||| ||||||||||||| ||||||||| ||||| || ||||| || ||||| || ||| |||| ||| ||| |
|
|
| T |
19890269 |
aaattttgatgattcaaaagctggtgtcagaggtttggtggagcatggggtgtcaaagatcccgcgcatttttcataccggtaagttggatatcggtgaa |
19890368 |
T |
|
| Q |
332 |
gactcagctagtgagtccaagttgagtattcccatcatagacctcaaagacatacacaacaatccagctcgacgtgtagaggtaattggccaaattcaaa |
431 |
Q |
| |
|
|||| |||||||| || || |||||| |||||||| ||||||||||||| ||||||| | ||| ||||| ||||| |||||||||| |||||||||| |
|
|
| T |
19890369 |
aactcggctagtgattctaaattgagtgttcccatcgtagacctcaaagatatacacatcgatcaagctcagcgtgtcgaggtaattgaacaaattcaaa |
19890468 |
T |
|
| Q |
432 |
gtgcatgccatgagtggggattttttcagataattaatcatgaaattcccattaatgtcttggatgaaatgattgatggaat |
513 |
Q |
| |
|
||||||| |||| | | |||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
19890469 |
gtgcatgtcatgtgggtggattttttcaggtaattaatcatgatattcccattgatgtcttggatgaaatgattcatggaat |
19890550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 153 - 513
Target Start/End: Original strand, 19844333 - 19844693
Alignment:
| Q |
153 |
ctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagt |
252 |
Q |
| |
|
||||||| |||||||| |||||| |||||||| |||| || ||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
19844333 |
ctctcaatatggtggtaaaaaactcaaaccaagtagaaaaatccactaattccacttatgatagatacaatgaagtgaaagcttttgatgattcaaaagc |
19844432 |
T |
|
| Q |
253 |
aggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttccatactgggaagatggaaatctccgaagactcagctagtgagtccaag |
352 |
Q |
| |
|
||||| | ||||||||||||||| || ||||||||||| |||| |||||||||| || || | |||| || | | | ||| | |||| || ||| |
|
|
| T |
19844433 |
tggtgtgagaggtttggtggagtccggagtgtcgaagatcccacagatgttccataatgagatgttggacattgctacaaagtcaatttgtgactctaag |
19844532 |
T |
|
| Q |
353 |
ttgagtattcccatcatagacctcaaagacatacacaacaatccagctcgacgtgtagaggtaattggccaaattcaaagtgcatgccatgagtggggat |
452 |
Q |
| |
|
|||| |||||||||||| |||||||||| ||| ||| ||||||| ||| |||| ||||||||||||| |||||| ||||||||| ||||||||||||| |
|
|
| T |
19844533 |
ttgaatattcccatcattgacctcaaaggtatagacatcaatccaactctgcgtgaagaggtaattggcaaaattcgaagtgcatgtcatgagtggggat |
19844632 |
T |
|
| Q |
453 |
tttttcagataattaatcatgaaattcccattaatgtcttggatgaaatgattgatggaat |
513 |
Q |
| |
|
|||||||| | |||||||||||||||||||| ||||| |||||||| |||||| ||||||| |
|
|
| T |
19844633 |
tttttcaggtgattaatcatgaaattcccatcaatgtattggatgagatgattcatggaat |
19844693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 416 - 504
Target Start/End: Complemental strand, 19877624 - 19877536
Alignment:
| Q |
416 |
attggccaaattcaaagtgcatgccatgagtggggattttttcagataattaatcatgaaattcccattaatgtcttggatgaaatgat |
504 |
Q |
| |
|
|||||||| |||||||| || ||| ||||||||||||||||||| | |||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
19877624 |
attggccagattcaaagagcctgcaatgagtggggattttttcaagtgattaatcatgaaatccccatctatgtcttggatgaaatgat |
19877536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 132 - 513
Target Start/End: Complemental strand, 49465622 - 49465243
Alignment:
| Q |
132 |
ctattctggtgttgtttctccctctcaacatggtggtgaaaaacacaaaccaattagaggaaaccactaattccacttatgatagagaagctgaagtgaa |
231 |
Q |
| |
|
|||||||||| ||||||| | ||||||||||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
49465622 |
ctattctggttttgtttc--cttctcaacatggtggtaaaaaacacaaatcaattagaggaagccactgattccacttatgatagaaaagctgaagtgaa |
49465525 |
T |
|
| Q |
232 |
agcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcatgttccatactgggaagatggaaatctccgaa |
331 |
Q |
| |
|
|||||||||||||||| || ||| ||||| |||||||| ||||||||||| || ||||| |||||| | |||||| | |||||| |||| ||| ||| |
|
|
| T |
49465524 |
agcttttgatgattcacgagcaggcgtcaatggtttggttgagtctggggtttcaaagatcccacgctttttccatgccgggaagttggacatcggtgaa |
49465425 |
T |
|
| Q |
332 |
gactcagctagtgagtccaagttgagtattcccatcatagacctcaaagacatacacaacaatccagctcgacgtgtagaggtaattggccaaattcaaa |
431 |
Q |
| |
|
||||| || |||| |||||||||||| |||| || ||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| || |
|
|
| T |
49465424 |
aactcaacttgtgactccaagttgagtgttccgattgtagacctcaaagacatacacaacaatccagctcaacgtgtagatgtaattcatcaaattcgaa |
49465325 |
T |
|
| Q |
432 |
gtgcatgccatgagtggggattttttcagataattaatcatgaaattcccattaatgtcttggatgaaatgattgatggaat |
513 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49465324 |
gtgcatgccatgagtggggattttttcaggtgattaatcatgaaattcccattaccgtcttggatgaaatgattgatggaat |
49465243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 352 - 514
Target Start/End: Original strand, 8349121 - 8349283
Alignment:
| Q |
352 |
gttgagtattcccatcatagacctcaaagacatacacaacaatccagctcgacgtgtagaggtaattggccaaattcaaagtgcatgccatgagtgggga |
451 |
Q |
| |
|
||||||| |||| |||||||| ||||||||||| |||| |||| |||| ||||| || |||||| |||||||| || ||||||| | ||||||||| |
|
|
| T |
8349121 |
gttgagtgttcctatcatagatctcaaagacatccacatttatccttctcgtcgtgttgaagtaattaaccaaattcgaactgcatgcaaggagtgggga |
8349220 |
T |
|
| Q |
452 |
ttttttcagataattaatcatgaaattcccattaatgtcttggatgaaatgattgatggaatt |
514 |
Q |
| |
|
|||||| | | |||||||||| ||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
8349221 |
ttttttaaagtgattaatcatggaattcccattaatgtattggatgaaacaattgatggaatt |
8349283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 201 - 303
Target Start/End: Original strand, 8348970 - 8349072
Alignment:
| Q |
201 |
attccacttatgatagagaagctgaagtgaaagcttttgatgattcaaaagtaggtgtcaaaggtttggtggagtctggggtgtcgaagattccacgcat |
300 |
Q |
| |
|
||||||| ||||||||| | |||||||||||||||||||||||||||||| | ||||| | |||| | ||||| |||||| | ||||| |||||||| |
|
|
| T |
8348970 |
attccacatatgatagaaatgctgaagtgaaagcttttgatgattcaaaacttggtgttagaggtcttatggagcgtggggtaacaaagatcccacgcat |
8349069 |
T |
|
| Q |
301 |
gtt |
303 |
Q |
| |
|
||| |
|
|
| T |
8349070 |
gtt |
8349072 |
T |
|
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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 505
Target Start/End: Complemental strand, 33769190 - 33769110
Alignment:
| Q |
425 |
attcaaagtgcatgccatgagtggggattttttcagataattaatcatgaaattcccattaatgtcttggatgaaatgatt |
505 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||||| | |||||||||| ||||| ||| ||| |||||||| |||||| |
|
|
| T |
33769190 |
attcgaagtgcatgcaaggagtggggattttttcaagtgattaatcatggtattccggttattgttttggatgagatgatt |
33769110 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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