View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10967_low_3 (Length: 363)
Name: NF10967_low_3
Description: NF10967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10967_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 345
Target Start/End: Complemental strand, 30071637 - 30071301
Alignment:
| Q |
11 |
cacagaccatggagaggggggaggtggcggtgatggaatgatagggaagaaagtagaagcaggtcagagaagagaga--gaaattcctgcatgcatttgt |
108 |
Q |
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| T |
30071637 |
cacagaccatggagaggggggaggtggcggtgatggaatgatagggaagaaagtagaagcgggtcagagaagagagaaagaaattcctgcatgcatttgt |
30071538 |
T |
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| Q |
109 |
gctgcgtgtacaatggattggtccaaatgttaagaaacctctatcaaatttggaaagatactttccaaaaccacccagtttttcagaagaataccatgat |
208 |
Q |
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| T |
30071537 |
gctgcgtgtacaatggattggtccaagtgttaagaaacctctatcaaatttggaaagatactttccaaaaccacccagtttttcagaagaataccatgat |
30071438 |
T |
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| Q |
209 |
attataaaataaggtttaaatccatgctacctttatttatctggcatgaaattcacttcctattggatgtttcaaagtaaatgaacatgattctttcttc |
308 |
Q |
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| T |
30071437 |
attataaaataaggtttaaatccatgctacctttatttatctggcatgaaattcacttcctattggatgtttcaaagtaaatgaacatgattctttcttc |
30071338 |
T |
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| Q |
309 |
tccaactcgagaagtacaacttgttgtggacatatcc |
345 |
Q |
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| T |
30071337 |
tcctactcgagaagtacaacttgttgtggccatatcc |
30071301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 189 - 337
Target Start/End: Complemental strand, 30052808 - 30052660
Alignment:
| Q |
189 |
tttcagaagaataccatgatattataaaataaggtttaaatccatgctacctttatttatctggcatgaaattcacttcctattggatgtttcaaagtaa |
288 |
Q |
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| T |
30052808 |
tttcagaagaataccatgatattataaaataaggtttaaatccatgctaccttcatttatgtagcctgaaattcacttcctataggatgtttcaaattaa |
30052709 |
T |
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| Q |
289 |
atgaacatgattctttcttctccaactcgagaagtacaacttgttgtgg |
337 |
Q |
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| T |
30052708 |
atgaacatgattctttcttctccaacttgagaagtacaacttgtggtgg |
30052660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 121 - 345
Target Start/End: Complemental strand, 30076958 - 30076735
Alignment:
| Q |
121 |
atggattggtccaaatgttaagaaacctctatcaaatttggaaagatactttccaaaaccacccagtttttcagaagaataccatgatattataaaataa |
220 |
Q |
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| T |
30076958 |
atggattggttctagtggtaaggaacttctatcaaatttagaaatacagtttccaaaatcaccca-tttttcagaagaacatcatgattttattaaataa |
30076860 |
T |
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| Q |
221 |
ggtttaaatccatgctacctttatttatctggcatgaaattcacttcctattggatgtttcaaagtaaatgaacatgattctttcttctccaactcgaga |
320 |
Q |
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| T |
30076859 |
ggttaaaatccaaactatctttatttatgtagcattgaattcacttcctattgaatctttcaaagaaaatgaacatgattctttcttctccaactcgaga |
30076760 |
T |
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| Q |
321 |
agtacaacttgttgtggacatatcc |
345 |
Q |
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|||||||||||| |||| ||||||| |
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| T |
30076759 |
agtacaacttgtggtggccatatcc |
30076735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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