View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10968_high_3 (Length: 456)

Name: NF10968_high_3
Description: NF10968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10968_high_3
NF10968_high_3
[»] chr4 (9 HSPs)
chr4 (1-437)||(29563402-29563837)
chr4 (255-344)||(24193467-24193558)
chr4 (255-356)||(24443920-24444023)
chr4 (260-345)||(40709476-40709563)
chr4 (315-354)||(49219083-49219122)
chr4 (301-355)||(47970248-47970302)
chr4 (255-291)||(35533344-35533380)
chr4 (260-300)||(36460468-36460508)
chr4 (260-300)||(36461959-36461999)
[»] chr8 (11 HSPs)
chr8 (260-356)||(34563137-34563235)
chr8 (255-356)||(35869719-35869822)
chr8 (311-355)||(2699246-2699290)
chr8 (260-345)||(31884481-31884568)
chr8 (255-350)||(40280296-40280393)
chr8 (261-355)||(35453709-35453805)
chr8 (304-354)||(12361125-12361175)
chr8 (255-292)||(31296004-31296041)
chr8 (260-292)||(7008516-7008548)
chr8 (315-355)||(26820143-26820183)
chr8 (311-355)||(38561666-38561710)
[»] scaffold0024 (1 HSPs)
scaffold0024 (255-354)||(27458-27559)
[»] chr7 (11 HSPs)
chr7 (255-353)||(30133933-30134031)
chr7 (260-345)||(6552366-6552453)
chr7 (255-344)||(22388001-22388092)
chr7 (369-425)||(44821963-44822019)
chr7 (254-292)||(2221846-2221884)
chr7 (301-355)||(3610826-3610880)
chr7 (261-354)||(42656402-42656498)
chr7 (384-425)||(3468633-3468674)
chr7 (315-355)||(991196-991236)
chr7 (314-354)||(39591554-39591594)
chr7 (260-337)||(47559712-47559791)
[»] chr5 (11 HSPs)
chr5 (255-345)||(26516180-26516272)
chr5 (271-345)||(29588778-29588854)
chr5 (255-292)||(7550618-7550655)
chr5 (255-300)||(13782009-13782054)
chr5 (255-353)||(20982223-20982323)
chr5 (255-292)||(39257537-39257574)
chr5 (260-292)||(11911801-11911833)
chr5 (256-292)||(23999039-23999075)
chr5 (263-328)||(27104527-27104594)
chr5 (255-352)||(29115302-29115401)
chr5 (315-355)||(33234306-33234345)
[»] chr6 (12 HSPs)
chr6 (255-355)||(32975860-32975962)
chr6 (260-352)||(5884947-5885041)
chr6 (255-355)||(9027459-9027561)
chr6 (266-300)||(8349807-8349841)
chr6 (255-292)||(2785819-2785856)
chr6 (301-354)||(24836286-24836339)
chr6 (262-344)||(31461567-31461651)
chr6 (255-300)||(31828914-31828959)
chr6 (260-345)||(2023725-2023812)
chr6 (260-292)||(9041568-9041600)
chr6 (311-355)||(24774698-24774742)
chr6 (255-287)||(31958701-31958733)
[»] chr1 (9 HSPs)
chr1 (255-354)||(36641757-36641858)
chr1 (255-344)||(14128568-14128659)
chr1 (255-292)||(5923372-5923409)
chr1 (255-292)||(21516255-21516292)
chr1 (302-355)||(40943470-40943523)
chr1 (260-300)||(24775162-24775202)
chr1 (263-354)||(26184645-26184734)
chr1 (260-292)||(52013784-52013816)
chr1 (381-425)||(52865944-52865988)
[»] chr2 (10 HSPs)
chr2 (255-353)||(33197327-33197427)
chr2 (260-298)||(5043694-5043732)
chr2 (301-355)||(28803592-28803646)
chr2 (322-355)||(1742118-1742151)
chr2 (255-300)||(5942807-5942852)
chr2 (302-355)||(10143103-10143156)
chr2 (369-425)||(1893291-1893347)
chr2 (255-299)||(19333429-19333473)
chr2 (255-307)||(40158645-40158697)
chr2 (260-359)||(40943798-40943897)
[»] scaffold0100 (1 HSPs)
scaffold0100 (260-345)||(42504-42591)
[»] chr3 (5 HSPs)
chr3 (262-300)||(29094270-29094308)
chr3 (255-304)||(20143821-20143870)
chr3 (255-304)||(23269319-23269368)
chr3 (301-345)||(16790184-16790228)
chr3 (260-292)||(22723949-22723981)


Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 29563837 - 29563402
Alignment:
Q  1 gagttgttattgagagaggtgatggatcgttgttggaggaagagaagtggaagtttcaagcggaaatgctgagagctgagtgtaatttgttgaggatgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29563837 gagttgttattgagagaggtgatggatcgttgttggaggaagagaagtggaagtttcaagcggaaatgctgagagctgagtgtaatttgttgaggatgga 29563738  T
Q  101 gaaagagatagctgttaagaagttggaaaggactcgttccaagatggaacggactctaagatctgcagttcatacccttgtttctgttagtttcactttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29563737 gaaagagatagctgttaagaagttggaaaggactcgttccaagatggaacggactctaagatctgcagttcatacccttgtttctgttagtttcactttc 29563638  T
Q  201 tccttcaaactttcatttttattctatcattgtattgttttttcgatcaatttggtttcgataaacaacttaattaaacgcttatagcataaccacttat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29563637 tccttcaaactttcatttttattctatcattgtattgttttttcgatcaatttggttt-gataaacaacttaattaaacgcttatagcataaccacttat 29563539  T
Q  301 tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaacattgtcatgtactagctgttttcggaagctattctagagaacttg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29563538 tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaacattgtcatgtactagctgttttcagaagctattctagagaacttg 29563439  T
Q  401 tgggaataagttgaaaacaacttatagatattcgata 437  Q
    |||||||||||||||||||||||||||||||||||||    
T  29563438 tgggaataagttgaaaacaacttatagatattcgata 29563402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 344
Target Start/End: Original strand, 24193467 - 24193558
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaa 344  Q
    |||| |||||||||||||||| | | |||||||||||| | |||||  ||||||||| ||| |||||||||||| |||||||||||||||||    
T  24193467 gtttggataaacaacttaattgagcacttatagcataaacgcttatcatataagtacttatgtataagttatttttacaacaaaatataaaa 24193558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 356
Target Start/End: Original strand, 24443920 - 24444023
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtca 352  Q
    |||| |||| ||||||| ||||| |||||||||||||| |||||||  ||||||| | ||| ||||||  ||||||||||||||||||||||| || |||    
T  24443920 gtttggatacacaactttattaagcgcttatagcataagcacttatcatataagttcttatgtataagcgatttctacaacaaaatataaaataaattca 24444019  T
Q  353 aaca 356  Q
    ||||    
T  24444020 aaca 24444023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 345
Target Start/End: Complemental strand, 40709563 - 40709476
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataaccactta--ttataagtacgtatatataagttatttctacaacaaaatataaaat 345  Q
    ||||||||||||||||||  ||||||| ||||||||||||   ||||||| | ||| |||||| | |||||| ||||||| |||||||    
T  40709563 gataaacaacttaattaagtgcttatatcataaccacttaatatataagtgcttatttataagctgtttctataacaaaagataaaat 40709476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 49219083 - 49219122
Alignment:
Q  315 tataagttatttctacaacaaaatataaaatgaagtcaaa 354  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  49219083 tataagttatttctataacaaaatataaaataaagtcaaa 49219122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 355
Target Start/End: Original strand, 47970248 - 47970302
Alignment:
Q  301 tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaac 355  Q
    ||||||| | ||| |||||| |||||||| ||||||| |||||||||||||||||    
T  47970248 tataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaac 47970302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 35533380 - 35533344
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcata 291  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  35533380 gtttccataaacaacttaattaagcgcttatagcata 35533344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 36460468 - 36460508
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataaccacttat 300  Q
    |||||||| |||||||| ||||||||||||||| |||||||    
T  36460468 gataaacagcttaattagacgcttatagcataaacacttat 36460508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 36461959 - 36461999
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataaccacttat 300  Q
    ||||| |||||||| ||| ||||||||||||||||||||||    
T  36461959 gataaccaacttaaataagcgcttatagcataaccacttat 36461999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 260 - 356
Target Start/End: Original strand, 34563137 - 34563235
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaaca 356  Q
    ||||||||||||||||||||||||||||||||| || ||||  ||||||| | |||||||||||||||||||  |||||  ||||||| ||||||||||    
T  34563137 gataaacaacttaattaaacgcttatagcataaacatttatcatataagtgcttatatataagttatttctatgacaaaggataaaataaagtcaaaca 34563235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 356
Target Start/End: Original strand, 35869719 - 35869822
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtca 352  Q
    |||| |||| ||||||| ||||| |||||||||||||| |||||||  ||||||| | ||| ||||||  ||||||||||||||||||||||| || |||    
T  35869719 gtttggatacacaactttattaagcgcttatagcataagcacttatcatataagttcttatgtataagcgatttctacaacaaaatataaaataaattca 35869818  T
Q  353 aaca 356  Q
    ||||    
T  35869819 aaca 35869822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 2699246 - 2699290
Alignment:
Q  311 tatatataagttatttctacaacaaaatataaaatgaagtcaaac 355  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  2699246 tatatataagttatttctacaacaaaatataaaataaagttaaac 2699290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 345
Target Start/End: Original strand, 31884481 - 31884568
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataaccacttattata--agtacgtatatataagttatttctacaacaaaatataaaat 345  Q
    ||||||||||| |||||| | |||||||||||| | ||||| |||  ||| | ||| ||||||||||||||| |||||||||||||||    
T  31884481 gataaacaactcaattaagcacttatagcataagcgcttatcatacaagtgcatatgtataagttatttctataacaaaatataaaat 31884568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 350
Target Start/End: Complemental strand, 40280393 - 40280296
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagt 350  Q
    |||| ||| ||||| | |||||| |||||||||||  | | |||||  ||||||| | ||||||||||||||||||||||||||| ||||||| ||||    
T  40280393 gtttggattaacaattgaattaagcgcttatagcaatagcgcttatcatataagtgcctatatataagttatttctacaacaaaagataaaataaagt 40280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 261 - 355
Target Start/End: Complemental strand, 35453805 - 35453709
Alignment:
Q  261 ataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaac 355  Q
    |||||||||||||||||  | ||||||||||| | ||| |  ||||||||| |||||||||  | |||||||||||||| ||||||| |||| ||||    
T  35453805 ataaacaacttaattaagtgattatagcataagcgcttgtcatataagtacttatatataatctgtttctacaacaaaagataaaataaagttaaac 35453709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 354
Target Start/End: Original strand, 12361125 - 12361175
Alignment:
Q  304 aagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaa 354  Q
    |||||| ||||||||||||||||||| ||  ||| ||||||||||||||||    
T  12361125 aagtacttatatataagttatttctataaataaagataaaatgaagtcaaa 12361175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 31296004 - 31296041
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataa 292  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  31296004 gtttcgataaacaacttaattaaacgattatagtataa 31296041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 7008516 - 7008548
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataa 292  Q
    |||||||||||||||||| ||||||||||||||    
T  7008516 gataaacaacttaattaagcgcttatagcataa 7008548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 26820143 - 26820183
Alignment:
Q  315 tataagttatttctacaacaaaatataaaatgaagtcaaac 355  Q
    ||||||||||||||| ||||||| ||||||| |||||||||    
T  26820143 tataagttatttctataacaaaagataaaataaagtcaaac 26820183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 38561666 - 38561710
Alignment:
Q  311 tatatataagttatttctacaacaaaatataaaatgaagtcaaac 355  Q
    |||||||||||||||| || ||||||| ||||||| |||||||||    
T  38561666 tatatataagttatttatataacaaaagataaaataaagtcaaac 38561710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 354
Target Start/End: Original strand, 27458 - 27559
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtca 352  Q
    |||| |||||||||||||| |||||||||||||||||| | |||||  | ||||| | ||| ||||||||||||||| |||| || ||||||| ||||||    
T  27458 gtttggataaacaacttaaataaacgcttatagcataagctcttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaagtca 27557  T
Q  353 aa 354  Q
    ||    
T  27558 aa 27559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 353
Target Start/End: Original strand, 30133933 - 30134031
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttattataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaa 353  Q
    |||| ||||||||||| ||||||| ||||||||||||| | ||||| ||||||   ||| |||||| ||||| |||||||||| ||||||| |||||||    
T  30133933 gtttggataaacaactcaattaaatgcttatagcataagcgcttatcataagtgtttatgtataagctatttttacaacaaaagataaaataaagtcaa 30134031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 345
Target Start/End: Complemental strand, 6552453 - 6552366
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaat 345  Q
    ||||| |||||||||||||| |||| | |||||  ||||||  ||||||| | ||| || |||||||||||||||||||| |||||||    
T  6552453 gataagcaacttaattaaacacttaaatcataagtacttatcatataagtgcttatgtacaagttatttctacaacaaaagataaaat 6552366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 344
Target Start/End: Complemental strand, 22388092 - 22388001
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaa 344  Q
    |||| |||||||||||||||||| |||||||| ||||| |||||||  | ||||| | |||  ||||| |||||||| ||||||| ||||||    
T  22388092 gtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctataacaaaagataaaa 22388001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 44821963 - 44822019
Alignment:
Q  369 agctgttttcggaagctattctagagaacttgtgggaataagttgaaaacaacttat 425  Q
    ||||||||||  |||||||||| |||||||| ||  |||||||||||||||||||||    
T  44821963 agctgttttcataagctattctggagaacttatgaaaataagttgaaaacaacttat 44822019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 2221846 - 2221884
Alignment:
Q  254 ggtttcgataaacaacttaattaaacgcttatagcataa 292  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  2221846 ggtttggataaacaacttaattaaacacttatagcataa 2221884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 3610880 - 3610826
Alignment:
Q  301 tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaac 355  Q
    ||||||| | ||| |||||| |||||||||||||||| ||||||||||| |||||    
T  3610880 tataagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaac 3610826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 354
Target Start/End: Original strand, 42656402 - 42656498
Alignment:
Q  261 ataaacaacttaattaaacgcttatagcataaccacttat---tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaa 354  Q
    ||||||||||| ||||   ||||||||||||| | |||||    ||||| || |||||||||| |||||||| ||||||| ||||||| ||||||||    
T  42656402 ataaacaacttcattagtagcttatagcataagcgcttatcaaaataagcacttatatataagctatttctataacaaaagataaaataaagtcaaa 42656498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 425
Target Start/End: Original strand, 3468633 - 3468674
Alignment:
Q  384 ctattctagagaacttgtgggaataagttgaaaacaacttat 425  Q
    |||| ||||||||||||||| ||||||||| |||||||||||    
T  3468633 ctatcctagagaacttgtggaaataagttggaaacaacttat 3468674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 991196 - 991236
Alignment:
Q  315 tataagttatttctacaacaaaatataaaatgaagtcaaac 355  Q
    |||||||||||||| |||||||| ||||||||||| |||||    
T  991196 tataagttatttctgcaacaaaagataaaatgaagacaaac 991236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 39591594 - 39591554
Alignment:
Q  314 atataagttatttctacaacaaaatataaaatgaagtcaaa 354  Q
    |||||||||||||||| ||||||| ||||||| ||||||||    
T  39591594 atataagttatttctataacaaaagataaaataaagtcaaa 39591554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 337
Target Start/End: Complemental strand, 47559791 - 47559712
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaa 337  Q
    ||||||||||||||||| | |||||||  |||| |||| ||  ||||||| | |||  ||||||||||||||||||||||    
T  47559791 gataaacaacttaattatatgcttataatataaacactaatcatataagtgcttatgaataagttatttctacaacaaaa 47559712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 345
Target Start/End: Original strand, 26516180 - 26516272
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaat 345  Q
    |||| |||||||||||||||||| |||||||||||||| | |||||  ||||||| | ||| |||||| |||||||| ||||||| |||||||    
T  26516180 gtttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaat 26516272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 345
Target Start/End: Original strand, 29588778 - 29588854
Alignment:
Q  271 taattaaacgcttatagcataaccacttattata--agtacgtatatataagttatttctacaacaaaatataaaat 345  Q
    ||||||| |||||||||||||| ||||| |||||  ||| | ||| |||||| |||||||| |||||||||||||||    
T  29588778 taattaagcgcttatagcataaacactttttatataagtgcttatgtataagctatttctataacaaaatataaaat 29588854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 7550655 - 7550618
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataa 292  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  7550655 gtttagataaacaacttcattaaacgcttatagcataa 7550618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 300
Target Start/End: Complemental strand, 13782054 - 13782009
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttat 300  Q
    |||| |||||||||||||||||| ||||||| |||||| |||||||    
T  13782054 gtttagataaacaacttaattaagcgcttatggcataagcacttat 13782009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 353
Target Start/End: Complemental strand, 20982323 - 20982223
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtca 352  Q
    |||| |||||||||||| |||||  |||||||||||||   |||||  ||||||| | ||| |||||| |||||||| ||||||  ||||||| ||||||    
T  20982323 gtttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaagtca 20982224  T
Q  353 a 353  Q
    |    
T  20982223 a 20982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 39257574 - 39257537
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataa 292  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  39257574 gtttggataaacaacttaattaagcgcttatagcataa 39257537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 11911801 - 11911833
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataa 292  Q
    ||||||||||||||||||||||| |||||||||    
T  11911801 gataaacaacttaattaaacgctaatagcataa 11911833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 23999039 - 23999075
Alignment:
Q  256 tttcgataaacaacttaattaaacgcttatagcataa 292  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  23999039 tttcgataaacaacttaattaaatgcttatagaataa 23999075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 27104594 - 27104527
Alignment:
Q  263 aaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttct 328  Q
    |||||||| |||| |||||||||||||||| |||||||  ||||||| | ||  ||||||||||||||    
T  27104594 aaacaactcaatttaacgcttatagcataaacacttatcatataagtgcttacgtataagttatttct 27104527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 352
Target Start/End: Complemental strand, 29115401 - 29115302
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttattataa--gtacgtatatataagttatttctacaacaaaatataaaatgaagtca 352  Q
    |||| ||||||||  |||||||  |||||||||||||| || |||| ||||  || | ||| |||||| ||||||||||||||||  |||||| ||||||    
T  29115401 gtttggataaacactttaattacgcgcttatagcataaacatttatcataaaagtgcttatgtataagctatttctacaacaaaaggtaaaataaagtca 29115302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 33234306 - 33234345
Alignment:
Q  315 tataagttatttctacaacaaaatataaaatgaagtcaaac 355  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  33234306 tataagttatttctacgacaaa-tataaaatgaagtcaaac 33234345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 355
Target Start/End: Original strand, 32975860 - 32975962
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtca 352  Q
    |||| |||||||||||||||||| || ||||||||||| | ||| |  |||||||   ||| ||||||||||||||  ||||||||||||||| ||||||    
T  32975860 gtttagataaacaacttaattaagcgtttatagcataagcgcttctcatataagtgtttatgtataagttatttctgtaacaaaatataaaataaagtca 32975959  T
Q  353 aac 355  Q
    |||    
T  32975960 aac 32975962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 5885041 - 5884947
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtca 352  Q
    |||||||| |||| |||||| ||||||||| || ||  |||  ||||||| | ||| ||||| ||||||||| ||||||| ||||||||||||||    
T  5885041 gataaacagcttatttaaactcttatagcacaaacatgtatcatataagtgcatatgtataaattatttctataacaaaaaataaaatgaagtca 5884947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 355
Target Start/End: Original strand, 9027459 - 9027561
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttattata--agtacgtatatataagttatttctacaacaaaatataaaatgaagtca 352  Q
    |||| ||||||||  |||| ||| |||||||||||| | |||||||||||  ||| | ||| |||||| ||||||||||| | || ||||||| ||||||    
T  9027459 gtttggataaacagtttaagtaagcgcttatagcatgaacacttattatataagtgcttatctataagctatttctacaatagaagataaaataaagtca 9027558  T
Q  353 aac 355  Q
    |||    
T  9027559 aac 9027561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 300
Target Start/End: Complemental strand, 8349841 - 8349807
Alignment:
Q  266 caacttaattaaacgcttatagcataaccacttat 300  Q
    |||||||||||| ||||||||||||||||||||||    
T  8349841 caacttaattaagcgcttatagcataaccacttat 8349807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 2785856 - 2785819
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataa 292  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  2785856 gtttggataaacaacttaattaatcgcttatagcataa 2785819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 24836339 - 24836286
Alignment:
Q  301 tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaa 354  Q
    ||||||||  ||| ||||||||||||||| ||||||| ||||||| ||||||||    
T  24836339 tataagtatttatgtataagttatttctataacaaaagataaaataaagtcaaa 24836286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 344
Target Start/End: Original strand, 31461567 - 31461651
Alignment:
Q  262 taaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaa 344  Q
    ||||||||||||||||  |||||||  |||| |||||||  ||||||| | ||| |||||| |||||||| ||||||| ||||||    
T  31461567 taaacaacttaattaagtgcttatattataagcacttattgtataagtgcttatgtataagctatttctataacaaaagataaaa 31461651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 31828914 - 31828959
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttat 300  Q
    ||||| ||||||||||||||||| |||||||||| ||| |||||||    
T  31828914 gtttctataaacaacttaattaagcgcttatagcgtaaacacttat 31828959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 345
Target Start/End: Complemental strand, 2023812 - 2023725
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaat 345  Q
    |||||||||||||||||| | ||||||| |||  |||||||  |||||||    |||||||||||||||||| | ||||| |||||||    
T  2023812 gataaacaacttaattaagcacttatagtataggcacttatcatataagtgttcatatataagttatttctatagcaaaagataaaat 2023725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 9041600 - 9041568
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataa 292  Q
    |||||||||||||||||| ||||||||||||||    
T  9041600 gataaacaacttaattaagcgcttatagcataa 9041568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 355
Target Start/End: Original strand, 24774698 - 24774742
Alignment:
Q  311 tatatataagttatttctacaacaaaatataaaatgaagtcaaac 355  Q
    |||||||||  |||||||| ||||||||||||||| |||||||||    
T  24774698 tatatataaactatttctataacaaaatataaaataaagtcaaac 24774742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 31958733 - 31958701
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatag 287  Q
    |||| ||||||||||||||||||||||||||||    
T  31958733 gttttgataaacaacttaattaaacgcttatag 31958701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 354
Target Start/End: Original strand, 36641757 - 36641858
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtca 352  Q
    |||||||||||||||| |||||| | ||| | | ||||||   |||  ||||| ||| ||||||||||||||||||| ||||||| ||||||| ||||||    
T  36641757 gtttcgataaacaactaaattaacctcttttggtataaccgtgtatcatataattacttatatataagttatttctataacaaaagataaaataaagtca 36641856  T
Q  353 aa 354  Q
    ||    
T  36641857 aa 36641858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 255 - 344
Target Start/End: Complemental strand, 14128659 - 14128568
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaa 344  Q
    |||| |||||||||||||| |||| |||||||| ||||  ||||||  ||||||| | ||||| ||||||||||||| ||||| | ||||||    
T  14128659 gtttggataaacaacttaaataaatgcttatagtataaagacttatcatataagtgcttatatgtaagttatttctaaaacaacagataaaa 14128568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 5923372 - 5923409
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataa 292  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  5923372 gtttggataaacaacttaattatacgcttatagcataa 5923409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 21516255 - 21516292
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataa 292  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  21516255 gtttggataaacaacttaattaaacgcttataacataa 21516292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 355
Target Start/End: Complemental strand, 40943523 - 40943470
Alignment:
Q  302 ataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaac 355  Q
    |||| ||| |||||||||| ||| |||||||||||| ||||||| |||||||||    
T  40943523 ataaatacctatatataagatatctctacaacaaaagataaaataaagtcaaac 40943470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 24775162 - 24775202
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataaccacttat 300  Q
    |||||| |||| |||||||| ||||||||||||||||||||    
T  24775162 gataaataactaaattaaacacttatagcataaccacttat 24775202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 354
Target Start/End: Original strand, 26184645 - 26184734
Alignment:
Q  263 aaacaacttaattaaacgcttatagcataaccacttattataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaa 354  Q
    ||||||||||||| | |||||||||||||| | |||||  ||||||| ||| |||||  |||||||| || ||||  |||||| ||||||||    
T  26184645 aaacaacttaattgagcgcttatagcataaacgcttat--taagtacttatgtataaactatttctataagaaaaggtaaaataaagtcaaa 26184734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 52013784 - 52013816
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataa 292  Q
    ||||||||||||||||||||| |||||||||||    
T  52013784 gataaacaacttaattaaacgtttatagcataa 52013816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 425
Target Start/End: Complemental strand, 52865988 - 52865944
Alignment:
Q  381 aagctattctagagaacttgtgggaataagttgaaaacaacttat 425  Q
    ||||||| |||||||| |||||| |||||||||||||||| ||||    
T  52865988 aagctatcctagagaagttgtggaaataagttgaaaacaaattat 52865944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 353
Target Start/End: Complemental strand, 33197427 - 33197327
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtca 352  Q
    |||| ||||||||||| |||||||| |||||| ||||| | |||||  ||||||| | ||| |||||| |||||||| ||||||| ||| ||| ||||||    
T  33197427 gtttggataaacaactaaattaaacacttataacataaacgcttatcatataagtgcttatctataagctatttctataacaaaagatagaataaagtca 33197328  T
Q  353 a 353  Q
    |    
T  33197327 a 33197327  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 298
Target Start/End: Complemental strand, 5043732 - 5043694
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataaccactt 298  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  5043732 gataaacaactaaattaagcgcttatagcataaccactt 5043694  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 355
Target Start/End: Complemental strand, 28803646 - 28803592
Alignment:
Q  301 tataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaac 355  Q
    ||||||| | ||||||||||||||||| | ||||||| ||||||| |||||||||    
T  28803646 tataagtgcttatatataagttatttcgataacaaaagataaaataaagtcaaac 28803592  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 1742151 - 1742118
Alignment:
Q  322 tatttctacaacaaaatataaaatgaagtcaaac 355  Q
    |||||||| |||||||||||||||||||||||||    
T  1742151 tatttctataacaaaatataaaatgaagtcaaac 1742118  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 5942807 - 5942852
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttat 300  Q
    |||| |||||||||||||||||| ||||||| |||||| |||||||    
T  5942807 gtttggataaacaacttaattaagcgcttattgcataagcacttat 5942852  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 10143103 - 10143156
Alignment:
Q  302 ataagtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaac 355  Q
    |||||| | ||| ||||||||||||||| ||||||| ||||||| |||||||||    
T  10143103 ataagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaac 10143156  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 425
Target Start/End: Complemental strand, 1893347 - 1893291
Alignment:
Q  369 agctgttttcggaagctattctagagaacttgtgggaataagttgaaaacaacttat 425  Q
    |||||||||||||||||||  | |||||||||||  |||||| |||||| |||||||    
T  1893347 agctgttttcggaagctatcttggagaacttgtgaaaataagctgaaaataacttat 1893291  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 19333473 - 19333429
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccactta 299  Q
    |||| ||||| ||||| ||||||||||||||||||||| ||||||    
T  19333473 gtttggataatcaactaaattaaacgcttatagcataagcactta 19333429  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 307
Target Start/End: Original strand, 40158645 - 40158697
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttattataagt 307  Q
    |||| ||||||||||||||||    ||||||||||||||||||| ||||||||    
T  40158645 gtttggataaacaacttaatttgtagcttatagcataaccactttttataagt 40158697  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 359
Target Start/End: Original strand, 40943798 - 40943897
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataaccacttattataa-gtacgtatatataagttatttctacaacaaaatataaaatgaagtcaaacatt 358  Q
    |||||||| ||||||||||| | |||| ||||| || |||| |||| || | ||| |||||| || ||||| ||||||| ||||||| ||||||||||||    
T  40943798 gataaacagcttaattaaacacatatatcataaacatttatcataaagtgcttat-tataagctacttctataacaaaaaataaaataaagtcaaacatt 40943896  T

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Target: scaffold0100 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 345
Target Start/End: Original strand, 42504 - 42591
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataaccacttat--tataagtacgtatatataagttatttctacaacaaaatataaaat 345  Q
    |||||||||||||||||||| ||||||||| |  || ||||  ||||||| | ||| ||||||| ||||||| ||||||| |||||||    
T  42504 gataaacaacttaattaaacacttatagcagacacatttatcatataagtgcttatgtataagtcatttctataacaaaagataaaat 42591  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 300
Target Start/End: Original strand, 29094270 - 29094308
Alignment:
Q  262 taaacaacttaattaaacgcttatagcataaccacttat 300  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  29094270 taaacagcttaattaaacgcttatagcataaacacttat 29094308  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 304
Target Start/End: Original strand, 20143821 - 20143870
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttattata 304  Q
    |||| |||||||||||||| |||| | ||||||||||| |||||||||||    
T  20143821 gtttggataaacaacttaactaaaggtttatagcataaacacttattata 20143870  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 304
Target Start/End: Complemental strand, 23269368 - 23269319
Alignment:
Q  255 gtttcgataaacaacttaattaaacgcttatagcataaccacttattata 304  Q
    |||| |||||||||||||| |||| | ||||||||||| |||||||||||    
T  23269368 gtttggataaacaacttaactaaaggtttatagcataaacacttattata 23269319  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 16790228 - 16790184
Alignment:
Q  301 tataagtacgtatatataagttatttctacaacaaaatataaaat 345  Q
    ||||||| | ||||||||||||||||||| ||||||| |||||||    
T  16790228 tataagtgcttatatataagttatttctataacaaaagataaaat 16790184  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 22723949 - 22723981
Alignment:
Q  260 gataaacaacttaattaaacgcttatagcataa 292  Q
    |||||||||||||||||| ||||||||||||||    
T  22723949 gataaacaacttaattaagcgcttatagcataa 22723981  T

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