View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10968_high_8 (Length: 266)
Name: NF10968_high_8
Description: NF10968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10968_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 15 - 251
Target Start/End: Complemental strand, 9877133 - 9876897
Alignment:
| Q |
15 |
caattttttctgtgtacacatagtaacaatgtgttaatacaaatgtttaaacacacatcaaaccttgaatataattaaagatttgaagtaagaaagttaa |
114 |
Q |
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| T |
9877133 |
caattttttctgtgtacacatagtaacaatgtgttaatacaaatgtttaaacactcatcaaaccttgaatataattaaagatttgaattaagaaagttaa |
9877034 |
T |
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| Q |
115 |
cctaccaagaacatgcagaactgaataacatatagagagaaaaggcttggtgggtatatgagcagcttcatggttttcttcagttggtttaactattacc |
214 |
Q |
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| T |
9877033 |
cctaccaagaacatgcagaactgaataacatatagagagaaaaggcttagtgggtatatgagcagcttcatggttttcttcagttggtttaactattacc |
9876934 |
T |
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| Q |
215 |
accatagaaatttcttcaataaaacaacttatctctg |
251 |
Q |
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| T |
9876933 |
accatagaaagttcttcaataaaacaacttatctctg |
9876897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 117 - 251
Target Start/End: Complemental strand, 9871385 - 9871251
Alignment:
| Q |
117 |
taccaagaacatgcagaactgaataacatatagagagaaaaggcttggtgggtatatgagcagcttcatggttttcttcagttggtttaactattaccac |
216 |
Q |
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|||||||||| || ||||| |||||||||||||||| |||||||| | || || |||||||||||| | |||||| ||| ||||||||||| || | |
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| T |
9871385 |
taccaagaacttgtagaaccaaataacatatagagaggaaaggcttaatagggatgtgagcagcttcaagattttctccagaaggtttaactatcacaat |
9871286 |
T |
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| Q |
217 |
catagaaatttcttcaataaaacaacttatctctg |
251 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
9871285 |
catagaaagctcttcaataaaacaacttatctctg |
9871251 |
T |
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