View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10968_low_1 (Length: 458)
Name: NF10968_low_1
Description: NF10968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10968_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 97 - 394
Target Start/End: Complemental strand, 8859205 - 8858908
Alignment:
| Q |
97 |
aataacacaaatatagtcggttatagtgcagaatgggtcatatagcttagaataatgtgtgtgtacatatacatacgaatacctttaatttttatatact |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8859205 |
aataacacaaatatagtcggttatagtgcagaatgggtcatatagcttagaataatgtgtgtgtacatatacatacgaatacctttaatttttatatact |
8859106 |
T |
|
| Q |
197 |
catat--tacacctcagtttttcctctatatttctcttatgatcacatcattggcaacnnnnnnnncctgtatataacatcatactctctattcctttct |
294 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
8859105 |
catatattacacctcagtttttc-tctatatttctcttatgatcacat-attaacatattttttttcctgtatataacatcatactctctattcctttct |
8859008 |
T |
|
| Q |
295 |
ctcttaaggtatagatcaatagatattaagtgttcaagaaatattttctatatatgtaggatggtggtgtacaaggaccactagtactaaatattgtaaa |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8859007 |
ctcttaaggtatagatcaatagatattaagtgttcaagaaatattttctatatatgtaggatggtggtgtacaaggaccactagtactaaatattgtaaa |
8858908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 8859623 - 8859560
Alignment:
| Q |
18 |
aagttggatttataaggattgagtaaaccttataaatggatgtagtcttcatattaaaaattagttg |
84 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8859623 |
aagttggatttataaggattgagtca---ttataaatggatgtagtcttcatattaaaaattagttg |
8859560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University