View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10968_low_2 (Length: 457)
Name: NF10968_low_2
Description: NF10968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10968_low_2 |
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| [»] scaffold0325 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 89 - 439
Target Start/End: Original strand, 18892700 - 18893046
Alignment:
| Q |
89 |
gggagttgtgttgctcatgtggttctacctggttagagtgattagtctttgtagttgcgtgcaagatacctggtctatacccaaaaagtaactgcctttt |
188 |
Q |
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| T |
18892700 |
gggagttttgttgctcatgtgattctatctggttagagtgattagtctttgtatttgcgcgcaaaatacctggtccatacccaaaaagtaaccgcctttt |
18892799 |
T |
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| Q |
189 |
agttttatgatacatggttcactttagacat--ttttgggtgtttttagctttgtgctgattttgataacttatgaatgtattatatttgcatgtatgga |
286 |
Q |
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| T |
18892800 |
a------tgatacgtcgttcactttagacatgattttgggtggttttagcgttgtactgattttgacaacttatgaatgtattatatttgcatgtatgga |
18892893 |
T |
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| Q |
287 |
tctcttgacatgtaataaggttgtgttttatctagcttaggtcacaaggccggtaccatttccttgtttgggagtgctgcataaagagaagcatgtttta |
386 |
Q |
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| T |
18892894 |
tctcttgacatgtaataaggttgtgttttatctagcttaggtcacaaggcctgtaccatttccttgtttgggagtgctgcataaagagaagcatgtttta |
18892993 |
T |
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| Q |
387 |
ttgcattctgtggctgatgtcgtggttgaacaaggtgcactatttgctgtttt |
439 |
Q |
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| T |
18892994 |
ttgcattctgtggctgatgtcgtggttgaacaaggtgcactatttgctgtttt |
18893046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 6590111 - 6590158
Alignment:
| Q |
23 |
tggcggatctcttcagagacccgcgggggccacaacatcccccagatt |
70 |
Q |
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| T |
6590111 |
tggcggatctcttcagagacccctgggggccacagcatcccccagatt |
6590158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 5814783 - 5814737
Alignment:
| Q |
20 |
cagtggcggatctcttcagagacccgcgggggccacaacatccccca |
66 |
Q |
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| T |
5814783 |
cagtggcggatctcttcagagacccacggggaccacatcatccccca |
5814737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0325 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0325
Description:
Target: scaffold0325; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 20109 - 20060
Alignment:
| Q |
21 |
agtggcggatctcttcagagacccgcgggggccacaacatcccccagatt |
70 |
Q |
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| T |
20109 |
agtggcggatctctttagagaccaacgggggccacagcatcccccagatt |
20060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 33225978 - 33226034
Alignment:
| Q |
14 |
tcatcacagtggcggatctcttcagagacccgcgggggccacaacatcccccagatt |
70 |
Q |
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| T |
33225978 |
tcatcccagcggcggatctcttcaaagacccgtgggggccacaggatcccccagatt |
33226034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 24643942 - 24643893
Alignment:
| Q |
20 |
cagtggcggatctcttcagagacccgcgggggccacaacatcccccagatt |
70 |
Q |
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| T |
24643942 |
cagtggcggatctcttcagagaccc-ttggggccacaacatccccaagatt |
24643893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 421
Target Start/End: Original strand, 15803666 - 15803714
Alignment:
| Q |
372 |
gagaagcatgttttattgcattctgtggctgatgtcgtggttgaacaagg |
421 |
Q |
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| T |
15803666 |
gagaagcatgttttattgcattc-ctggcagatgtcgtggtggaacaagg |
15803714 |
T |
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