View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10968_low_6 (Length: 350)

Name: NF10968_low_6
Description: NF10968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10968_low_6
NF10968_low_6
[»] chr7 (3 HSPs)
chr7 (18-341)||(5918273-5918596)
chr7 (77-339)||(5903243-5903505)
chr7 (77-341)||(5911698-5911962)
[»] scaffold0003 (1 HSPs)
scaffold0003 (18-341)||(363374-363699)


Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 5918273 - 5918596
Alignment:
Q  18 ttttcattctgcaaaattattctactttcctccactcctttttcctgttctctccttattctacaaactacagaaattattttcccctttgagtcaagat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5918273 ttttcattctgcaaaattattctactttcctccactcctttttcctgttctctccttattctacaaactacagaaattattttcccctttgagtcaagat 5918372  T
Q  118 gaccatgacaaactcagctattggttttgaaggctacgaaaagaggcttgagataacnnnnnnngaaaacggtgttttctctgacccttctggattaggc 217  Q
    ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  5918373 gaccatgacaaactcagctatcggttttgaaggttatgaaaagaggcttgagataactttttttgaaaacggtgttttctctgacccttctggattaggc 5918472  T
Q  218 ctccgagcattgtccagagaccaaattgacgagattctgaaaccagcagaatgcaccattgttgactcactatctaatgattatgttgattcatatgttc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5918473 ctccgagcattgtccagagaccaaattgacgagattctgaaaccagcagaatgcaccattgttgactcactatctaatgattatgttgattcgtatgttc 5918572  T
Q  318 tttccgagtcaagtttattcatct 341  Q
    ||||||||||||||||||||||||    
T  5918573 tttccgagtcaagtttattcatct 5918596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 77 - 339
Target Start/End: Complemental strand, 5903505 - 5903243
Alignment:
Q  77 tctacaaactacagaaattattttcccctttgagtcaagatgaccatgacaaactcagctattggttttgaaggctacgaaaagaggcttgagataacnn 176  Q
    ||||||||| ||| ||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||      
T  5903505 tctacaaacaacaaaaattgttttctcctttgagtcaagatgaccatgacaaactcagctatcggttttgaaggctatgaaaagaggcttgagataactt 5903406  T
Q  177 nnnnngaaaacggtgttttctctgacccttctggattaggcctccgagcattgtccagagaccaaattgacgagattctgaaaccagcagaatgcaccat 276  Q
         ||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5903405 ttttcgaaaacggttttttctctgaccctgctggattaggcctccgagcattgtccaaagaccaaattgacgagattctgaaaccagcagaatgcaccat 5903306  T
Q  277 tgttgactcactatctaatgattatgttgattcatatgttctttccgagtcaagtttattcat 339  Q
    ||||||||||||||||||||| | ||||||||||||||||||||| |||||||| ||||||||    
T  5903305 tgttgactcactatctaatgactgtgttgattcatatgttctttctgagtcaagcttattcat 5903243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 77 - 341
Target Start/End: Original strand, 5911698 - 5911962
Alignment:
Q  77 tctacaaactacagaaattattttcccctttgagtcaagatgaccatgacaaactcagctattggttttgaaggctacgaaaagaggcttgagataacnn 176  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||      
T  5911698 tctacaagcaacaaaaattattttcccctttgagtcaagatgaccgtgacaaactcagctatcggttttgaaggctatgaaaagaggcttgagataactt 5911797  T
Q  177 nnnnngaaaacggtgttttctctgacccttctggattaggcctccgagcattgtccagagaccaaattgacgagattctgaaaccagcagaatgcaccat 276  Q
         ||||| ||| |||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  5911798 ttttcgaaaatggttttttctctgatcctgctggattaggcctccgagcattgtccaaagaccaaattgacgagattctgaaaccagcagaatgcactat 5911897  T
Q  277 tgttgactcactatctaatgattatgttgattcatatgttctttccgagtcaagtttattcatct 341  Q
    ||| |||||||||||||||||| | || ||||| ||||||||||| |||||||| ||||||||||    
T  5911898 tgtggactcactatctaatgatgacgtggattcgtatgttctttcggagtcaagcttattcatct 5911962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 363699 - 363374
Alignment:
Q  18 ttttcattctgcaaaattattctactttcctccactcctttttcctgttctc--tccttattctacaaactacagaaattattttcccctttgagtcaag 115  Q
    |||||||||||||||||||||||| ||| |||| |||||||||| ||| |||  ||| |||||||||||||||| ||||||||||||||||||| |||||    
T  363699 ttttcattctgcaaaattattctagtttactcctctcctttttcttgtcctccctccatattctacaaactacaaaaattattttcccctttgattcaag 363600  T
Q  116 atgaccatgacaaactcagctattggttttgaaggctacgaaaagaggcttgagataacnnnnnnngaaaacggtgttttctctgacccttctggattag 215  Q
    ||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||       |||||||||||||| ||||||||| |||||||||    
T  363599 atggccatgacaaactcagctatcggttttgaaggctatgaaaagaggcttgagataacttttttcgaaaacggtgttttttctgaccctgctggattag 363500  T
Q  216 gcctccgagcattgtccagagaccaaattgacgagattctgaaaccagcagaatgcaccattgttgactcactatctaatgattatgttgattcatatgt 315  Q
    || |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  363499 gcttccgggcattgtccaaagaccaaattgacgagattctgaaaccagcagaatgcaccattgttgactcactatctaatgattatgttgattcatatgt 363400  T
Q  316 tctttccgagtcaagtttattcatct 341  Q
    |||||| |||||||| ||||||||||    
T  363399 tctttctgagtcaagcttattcatct 363374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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