View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10968_low_7 (Length: 321)
Name: NF10968_low_7
Description: NF10968
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10968_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 114 - 304
Target Start/End: Original strand, 52166884 - 52167074
Alignment:
| Q |
114 |
actcatacaacgacacaaacatggttgaaactccggttagcaaatctgttttgaagagatcatctggtagtgtagactctattgggattggtgatttcga |
213 |
Q |
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| T |
52166884 |
actcatacagcgacacaaacatggttgaaactccggttagcaaatctgctttgaagagatcatctggtagtgtagactctattggggttggtgacgtgga |
52166983 |
T |
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| Q |
214 |
aactggacaagcatctgttacgaagccaccaaagatggtttgtgtgaagattgaaccaaaggacaagtaatcatttgcggcaaaggaaaat |
304 |
Q |
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| T |
52166984 |
aactggacaagcatctgttacgaagccaccaaagatggtttgtgtgaagattaaaccaaaggacaagtaatcatttgcggcaaaggaaaat |
52167074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 52166730 - 52166792
Alignment:
| Q |
14 |
caaaggcaggagagataaaactggagaggattcggatcccaaaaagagtgatggtattttgtc |
76 |
Q |
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| T |
52166730 |
caaaggcaggagagataaaactgaagaggatccggatcccaaaaagagtgatggtattttgtc |
52166792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 186 - 287
Target Start/End: Original strand, 22506373 - 22506474
Alignment:
| Q |
186 |
tagactctattgggattggtgatttcgaaactggacaagcatctgttacgaagccaccaaagatggtttgtgtgaagattgaaccaaaggacaagtaatc |
285 |
Q |
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| T |
22506373 |
tagactctattgggattggtgacgtcaaatctggacaagcatttgttacgcagccaacaaagatggtgtgtgtgaagattgaacccaaggacaagtaatc |
22506472 |
T |
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| Q |
286 |
at |
287 |
Q |
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|| |
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| T |
22506473 |
at |
22506474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 41782823 - 41782863
Alignment:
| Q |
14 |
caaaggcaggagagataaaactggagaggattcggatccca |
54 |
Q |
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| T |
41782823 |
caaaggcaggagagataaaacgggagaggatccggatccca |
41782863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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