View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10969_high_1 (Length: 441)
Name: NF10969_high_1
Description: NF10969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10969_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Complemental strand, 54218678 - 54218267
Alignment:
| Q |
16 |
aaatgatcaattgttgctggaaatgaaaccatttatatgttaagaatggtt---cttgcaccttgacggcaacgaagattgacaaagatatttctataac |
112 |
Q |
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| T |
54218678 |
aaatgatcaattgttgctggaaatgaaactatttatatgttaagaatggttgttcttgcaccttgacggcaacgaagattgacaaagatatttctataac |
54218579 |
T |
|
| Q |
113 |
atgtctttcaaaagatctcccttcctcctactaaaggctaaaacaaaggaatatatatgtagctagttgtcctacgaggaatgtcaagttattgtaagga |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54218578 |
atgtctttcaaaagatctcccttcctcctactaaaggctaaaa-------atatatatgtagctagttgtcctacgaagaatgtcaagttattgtaagga |
54218486 |
T |
|
| Q |
213 |
acgcagatcaaaaacttgatcgtatcttcattaccaagcaaccaactaatgttattaaagatggtttgcacattctgcttgattccatttgtagaggaat |
312 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54218485 |
acacagatcaaaaacttgatcgtatcttcattaccaagcaaccaactaatgttattaaagatggtttgcacattctgcttgattccatttgtagaggaat |
54218386 |
T |
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| Q |
313 |
gaaagtcctttaatcaaaattgaatcatcaatggttttacatgtataacgccccttcttgcatcatgtatcttggtttggccccaagattctcttagata |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
54218385 |
gaaagtcctttaatcaaaattgaatcatcaatggttttacatgtataacgccccttctcgcatcatgtatcttggtttggccccaagattctcttagata |
54218286 |
T |
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| Q |
413 |
acttcaataattccctttg |
431 |
Q |
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||||||||||||||||||| |
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| T |
54218285 |
acttcaataattccctttg |
54218267 |
T |
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