View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10969_low_2 (Length: 378)
Name: NF10969_low_2
Description: NF10969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10969_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 8169964 - 8169607
Alignment:
| Q |
1 |
ttctaaccattcacttttggtatataaataccaaaatatcttagccatcatcaacatattttggtcatggcaatagatcatgagtcaaggattactctcc |
100 |
Q |
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| T |
8169964 |
ttctaaccattcacttttggtatataaataccaaaatatcttagccatcatcaacatattttggtcatggcaatagatcatgagtcaaggattactctcc |
8169865 |
T |
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| Q |
101 |
ggccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatatgcgattggagttatgtaaatcaagggaaca |
200 |
Q |
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| T |
8169864 |
ggccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatatgcgattggagttatgtaaatcaagggaaca |
8169765 |
T |
|
| Q |
201 |
agctttgaatttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtccttccttatcct |
300 |
Q |
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| T |
8169764 |
agcttcgaatttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtccttccttatcct |
8169665 |
T |
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| Q |
301 |
gatgcaaagtttaaagcagatttaggttatgctattgggttcaactattggggccaag |
358 |
Q |
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| T |
8169664 |
gatgcaaagtttaaagcagatttaggttatgctattgggtttaactattggggccaag |
8169607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 2 - 358
Target Start/End: Complemental strand, 8172593 - 8172238
Alignment:
| Q |
2 |
tctaaccattcacttttggtatataaataccaaaatatcttagccatcatcaacatattttggtcatggcaatagatcatgagtcaaggattactctccg |
101 |
Q |
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| T |
8172593 |
tctaaccacacacttttggtgtataaataccaaaatatcttagccat-attaacatattgtggtcatggcaatagatcatgagtcaaggatcactctccg |
8172495 |
T |
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| Q |
102 |
gccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatatgcgattggagttatgtaaatcaagggaacaa |
201 |
Q |
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| T |
8172494 |
gccattcaaagaaagtgatgctgacgatgtgttattgtgggcaagtgatgaaagagtcatgcaatatacacgattgaagttatgtaaatcaagggaacaa |
8172395 |
T |
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| Q |
202 |
gctttgaatttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtccttccttatcctg |
301 |
Q |
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| T |
8172394 |
gctttgaatttcataaagaaagattgtatttacccattccaacaatcaatatgtcttgatgatcactctattggaattgtttttgttcttccaatttctt |
8172295 |
T |
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| Q |
302 |
atgcaaagtttaaagcagatttaggttatgctattgggttcaactattggggccaag |
358 |
Q |
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| T |
8172294 |
atgcaaagtttaaagcagatttaggttttgctattggattcaattattggggccaag |
8172238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 358
Target Start/End: Complemental strand, 8177352 - 8177191
Alignment:
| Q |
200 |
aagctttgaatttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtccttccttatcc |
299 |
Q |
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|||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||| |||| ||||| |||||||| |||| | |||||| || | |
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| T |
8177352 |
aagctttggatttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttgatgaccactccattggaatggtttggattcttcctcatgc |
8177253 |
T |
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| Q |
300 |
---tgatgcaaagtttaaagcagatttaggttatgctattgggttcaactattggggccaag |
358 |
Q |
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| T |
8177252 |
taatgatgagaaatataaagcagatatgggttatgctattggattcaactattggggtcaag |
8177191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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