View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10969_low_4 (Length: 249)
Name: NF10969_low_4
Description: NF10969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10969_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 43 - 233
Target Start/End: Original strand, 23621892 - 23622082
Alignment:
| Q |
43 |
aggtattttagtgtatgacttacttgcattatacagatttttgtaaaggtgattaaaagtaactgttttcaaattattccgcatttagagtttgaaattt |
142 |
Q |
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| T |
23621892 |
aggtattttagtgtctgacttacttgcattatacagatttttgtaaaggtgattaaaagtaactgttttcaaattattccgcatttagagtttgaaattt |
23621991 |
T |
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| Q |
143 |
caccactaccggtctgaaaattgagatgttacaatattactacatccgtcccttatatttggtccttttagctttttatgtttatgtccaa |
233 |
Q |
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| T |
23621992 |
caccactaccgctctgaaaattgagatgttacaatattgctacatccgtcccttatatttggtccttttagctttttatgtttatctccaa |
23622082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 23617913 - 23618041
Alignment:
| Q |
66 |
ttgcattatacagatttttgtaaaggtgattaaaagtaactgttttcaaattattccgcatttagagtttgaaatttcaccactaccggtctgaaaattg |
165 |
Q |
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| T |
23617913 |
ttgcattatacagatttttgtaaaggcgattaagagtaatggttttcaaattatttcaaatttagagtttaaaatttcaccaccaccgctccgaaagttg |
23618012 |
T |
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| Q |
166 |
agatgttacaatattactacatccgtccc |
194 |
Q |
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| T |
23618013 |
agatgttacaatatttctacatccgtccc |
23618041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 23618043 - 23618105
Alignment:
| Q |
165 |
gagatgttacaatattactacatccgtcccttatatttggtccttttagctttttatgtttat |
227 |
Q |
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| T |
23618043 |
gagatgttacaatatttctacatccatccctaatttttggtccttttagccttttatttttat |
23618105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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