View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10969_low_5 (Length: 244)
Name: NF10969_low_5
Description: NF10969
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10969_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 3314093 - 3314194
Alignment:
| Q |
127 |
tattgagaatatatagttacaatcacatagaattgtttttcatcttctcggttctccttaattctctctaaatattgattacttgcaaagcaagcaatct |
226 |
Q |
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| T |
3314093 |
tattgagattatatagttacaatcacatagacttgtttttcatcttctcggttctccttaattctctctaaatattgattacttgcaaaacaagcaatct |
3314192 |
T |
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| Q |
227 |
ct |
228 |
Q |
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|| |
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| T |
3314193 |
ct |
3314194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 198
Target Start/End: Complemental strand, 11753029 - 11752899
Alignment:
| Q |
69 |
agcaagtaacttacatatgtagttgtatataaacttgtcacctcacaattttcattgttattgagaatatatagttacaatcacatagaattgtttttca |
168 |
Q |
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| T |
11753029 |
agcaattaactcacatatgattttgtatatgaacttgtaacatcacaattttcattgctaatgaaaattcatagttacaatcacatagaactctctttct |
11752930 |
T |
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| Q |
169 |
tc-ttctcggttctccttaattctctctaaa |
198 |
Q |
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| T |
11752929 |
tctttctcaattctcattaattctctctaaa |
11752899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 11755851 - 11755795
Alignment:
| Q |
69 |
agcaagtaacttacatatgtagttgtatataaacttgtcacctcacaattttcattg |
125 |
Q |
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| T |
11755851 |
agcaactaactcacatatgatgttgtatataaacttgtaacctcacaattttcattg |
11755795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 3826514 - 3826588
Alignment:
| Q |
69 |
agcaagtaacttacatatgtagttgtatataaacttgtcacctcacaattttcattgttattgagaatatatagt |
143 |
Q |
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| T |
3826514 |
agcaagtaactcacatatgtagtagtatataaacatgcaacgtcacaattttcattgcgaatgagaatacatagt |
3826588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 31322734 - 31322686
Alignment:
| Q |
183 |
cttaattctctctaaatattgattacttgcaaagcaagcaatctctgct |
231 |
Q |
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| T |
31322734 |
cttaattctctctcaatattgattgcttgcacatcaagcaatctctgct |
31322686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 31370077 - 31370029
Alignment:
| Q |
183 |
cttaattctctctaaatattgattacttgcaaagcaagcaatctctgct |
231 |
Q |
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||||||||||||| |||||||||| |||||| | ||||||||||||||| |
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| T |
31370077 |
cttaattctctctcaatattgattgcttgcacatcaagcaatctctgct |
31370029 |
T |
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