View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1096_high_1 (Length: 513)

Name: NF1096_high_1
Description: NF1096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1096_high_1
NF1096_high_1
[»] chr7 (1 HSPs)
chr7 (33-362)||(4488186-4488515)
[»] chr3 (3 HSPs)
chr3 (36-264)||(1409606-1409834)
chr3 (303-362)||(1409549-1409608)
chr3 (136-200)||(1402810-1402874)
[»] chr5 (2 HSPs)
chr5 (238-362)||(19023787-19023911)
chr5 (140-213)||(11955361-11955434)
[»] chr4 (1 HSPs)
chr4 (303-362)||(14244855-14244914)
[»] chr2 (1 HSPs)
chr2 (303-362)||(6355405-6355464)
[»] chr1 (1 HSPs)
chr1 (140-239)||(40682223-40682322)
[»] chr8 (1 HSPs)
chr8 (36-69)||(22621884-22621917)


Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 33 - 362
Target Start/End: Complemental strand, 4488515 - 4488186
Alignment:
Q  33 agaaaatgtgtgagcagagaaaggtaagatattgttcttcatgaatattaatttgaacaaatagtgcactataggaactgcattcttatactattgttga 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4488515 agaaaatgtgtgagcagagaaaggtaagatattgttcttcatgaatattaatttgaacaaatagtgcactataggaactgcattcttatactattgttga 4488416  T
Q  133 aacaggtgcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttgg 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4488415 aacaggtgcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtgatgaagtatgctataacgaaattggtcgttgg 4488316  T
Q  233 agcttcaatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttattatcatcaatagtg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4488315 agcttcaatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttattatcaccaatagtg 4488216  T
Q  333 ctaagatcaaactggattcttcctcaaata 362  Q
    |||| |||||||||||||||||||||||||    
T  4488215 ctaaaatcaaactggattcttcctcaaata 4488186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 36 - 264
Target Start/End: Complemental strand, 1409834 - 1409606
Alignment:
Q  36 aaatgtgtgagcagagaaaggtaagatattgttcttcatgaatattaatttgaacaaatagtgcactataggaactgcattcttatactattgttgaaac 135  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1409834 aaatgtgtgagcagagaaaggtaagatattgttcttcatgaagattaatttgaacaaatagtgcactataggaactgcattcttatactattgttgaaac 1409735  T
Q  136 aggtgcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttggagc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||||||||||||||||    
T  1409734 aggtgcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcggtggcagaggaagtaaccaagtatgctgtaacgaaattggtcgttggagc 1409635  T
Q  236 ttcaatgggtggcttatttaaaaggtact 264  Q
    |||||  ||||||||||||||||||||||    
T  1409634 ttcaaccggtggcttatttaaaaggtact 1409606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 362
Target Start/End: Complemental strand, 1409608 - 1409549
Alignment:
Q  303 actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata 362  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||    
T  1409608 actaataaagatttattatcaccaatagttctaagatcaaactgcattcttcctcaaata 1409549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 1402874 - 1402810
Alignment:
Q  136 aggtgcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagta 200  Q
    ||||||||||||| || ||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  1402874 aggtgcatgtagatgtagtagtgattgaatcagatgatgtagcaactgcagtagcagaggaagta 1402810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 238 - 362
Target Start/End: Complemental strand, 19023911 - 19023787
Alignment:
Q  238 caatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatttaccttgactaataaagatttattatcatcaatagtgctaag 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| |||    
T  19023911 caatgggtggcttatttaaaaggtacttctataatgacagcaaaatcattttagcatctaccttgactaataatgatttattatcaccaatagtgccaag 19023812  T
Q  338 atcaaactggattcttcctcaaata 362  Q
    |||||||||||||| ||||||||||    
T  19023811 atcaaactggattcatcctcaaata 19023787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 213
Target Start/End: Complemental strand, 11955434 - 11955361
Alignment:
Q  140 gcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgcta 213  Q
    |||||||||  || |||||||||||| ||||||||| ||| ||||| | |||||||||||| | ||| ||||||    
T  11955434 gcatgtagatattttagtgattgaataagatgatgtagcaactgcaatagcagaggaagtagttaaggatgcta 11955361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 303 - 362
Target Start/End: Complemental strand, 14244914 - 14244855
Alignment:
Q  303 actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata 362  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14244914 actaataaagatttattatcaccaatagtgctaagatcaaactggattcttcctcaaata 14244855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 303 - 362
Target Start/End: Complemental strand, 6355464 - 6355405
Alignment:
Q  303 actaataaagatttattatcatcaatagtgctaagatcaaactggattcttcctcaaata 362  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  6355464 actaataaagatttattatcaccaatagtgctaagatcaaactggattcttcctcaaata 6355405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 40682223 - 40682322
Alignment:
Q  140 gcatgtagaagttgtagtgattgaatcagatgatgtggcatctgcagtggcagaggaagtaatgaagtatgctataacgaaattggtcgttggagcttca 239  Q
    ||||||||| ||| |||||||||||||||||||||| |||  |||| | ||||||||||||   ||| |||||||||| ||| | ||| |||||||||||    
T  40682223 gcatgtagatgttttagtgattgaatcagatgatgtagcaattgcaatagcagaggaagtagctaaggatgctataaccaaacttgtccttggagcttca 40682322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 69
Target Start/End: Complemental strand, 22621917 - 22621884
Alignment:
Q  36 aaatgtgtgagcagagaaaggtaagatattgttc 69  Q
    ||||||||||||| ||||||||||||||||||||    
T  22621917 aaatgtgtgagcatagaaaggtaagatattgttc 22621884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University