View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1096_high_5 (Length: 356)
Name: NF1096_high_5
Description: NF1096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1096_high_5 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 36375370 - 36375015
Alignment:
| Q |
1 |
tcatcaagtatcaagagtccgggactttccctcaatgctttagccgtgcgctttctgtgtgannnnnnnnnatcttctgttctcattaaggctaaaaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36375370 |
tcatcaagtatcaagagtccgggactttccctcaatgctttagccgtgcgctttctgtgtgaattttttttatcttctgttctcattaaggctaaaaatg |
36375271 |
T |
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| Q |
101 |
aggaatagcccatgacaagaacactagggtgtgaattccagcttttgatctttcgtagacaatcaaaatcatgcttgacaccattagaatttgaaactcc |
200 |
Q |
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| T |
36375270 |
aggaatagcccatgacaagaacactagggtgtgaattccagcttttgatcttttgtagacaatcaaaatcatgcttgacaccattagaatttgaaactcc |
36375171 |
T |
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| Q |
201 |
aggtagaaccactgatttaggtgtcatcgaacgtctctgggttcgactgctgtggataagatacaccggcatgggaatattccatttttcgaactctttt |
300 |
Q |
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| T |
36375170 |
aggtagaaccactgattttggtgtcatcgaatgtctctgggtttgactgctgtggataagatacaccggcatgggaatattccatttttcgaactctttt |
36375071 |
T |
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| Q |
301 |
tgccatgtgtagagtgtggtctttggagctaggaccaatggtcttttctctggaaa |
356 |
Q |
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| T |
36375070 |
tgccatgtgtagagtgtggtctttggagctaggaccaatggtcttttctctggaaa |
36375015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 32250100 - 32250464
Alignment:
| Q |
1 |
tcatcaagtatcaagagtccgggactttccctcaatgctttagccgtgcgctttctgtgtgannnnnnnnnatcttctgttctcattaaggctaaaaatg |
100 |
Q |
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|||||||||||||||| ||| || ||||| ||||||||||||||| || ||||||||| ||||| || ||||||||| |||||||| |
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| T |
32250100 |
tcatcaagtatcaagattccagggctttctctcaatgctttagccatgtattttctgtgttcgaattttgtatcttttgatctcattaattgtaaaaatg |
32250199 |
T |
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| Q |
101 |
aggaatagcccatgacaagaacactagggtgtgaattccagcttttg-atctttcgtagacaatcaaaatcatgcttgacaccattagaat---ttgaaa |
196 |
Q |
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| T |
32250200 |
aagtatagcccatgacaagaacactagggtgtgagtgcca-cttttgtatcttgctgagacaatccaaaacatgtttgacatcactagaaggtcttggaa |
32250298 |
T |
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| Q |
197 |
ctccaggtagaaccactgatttaggtgtcatcgaacgtct--ctgg----gttcgactgctgtggataagatacaccggcatgggaatattccatttttc |
290 |
Q |
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|||||| |||| || |||||| |||||| |||||| | |||| ||||||| || ||||||||||| ||||||| | ||| |||||||||| |
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| T |
32250299 |
atccaggaagaatcattgattttggtgtcgtcgaacttgaacctggagaggttcgacggccatggataagataaaccggcacagaaatcttccatttttt |
32250398 |
T |
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| Q |
291 |
gaactctttttgccatgtgtagagtgtggtctttggagctaggaccaatggtcttttctctggaaa |
356 |
Q |
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|||||||||| |||| |||||||||||||| |||||||||||||| | |||| |||| ||||||| |
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| T |
32250399 |
gaactcttttcgccacgtgtagagtgtggtttttggagctaggactagaggtcgtttccctggaaa |
32250464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 356
Target Start/End: Original strand, 8844714 - 8844992
Alignment:
| Q |
81 |
tctcattaaggctaaaaatgaggaatagcccatgacaagaacactagggtgtgaattccagcttttgatctttcgtagacaatcaaaatcatgcttgaca |
180 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||| |||||||||| ||| |||| || |||| |||||||| ||| |||| || ||| |
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| T |
8844714 |
tctcattaaggctaaaaatgaagtgtagcccatgacaagaacacttgggtgtgaatgccacttttttatttttccaagacaatccaaaacatgttttaca |
8844813 |
T |
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| Q |
181 |
ccattagaat---ttgaaactccaggtagaaccactgatttaggtgtcatcgaacgtctctgggttcgactgctgtggataagatacaccggcatgggaa |
277 |
Q |
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| T |
8844814 |
tcaccagaaggtcttggaactccgggaagaaccgtaggttttggagccgttgaatctctctgggtttgacggccttggataagatacacgggcacaggaa |
8844913 |
T |
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| Q |
278 |
tattccatttttcgaactctttttgccatgtgtagagtgtggtctttggagctaggaccaatggtcttttctctggaaa |
356 |
Q |
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|||||||||| ||||||||| ||||||||||||||||| ||||| || ||||| |||||||||||| ||||||| |
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| T |
8844914 |
ccttccattttttgaactctttgcaccatgtgtagagtgtggattttggtgcaaggactaatggtcttttccctggaaa |
8844992 |
T |
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