View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1096_low_1 (Length: 861)
Name: NF1096_low_1
Description: NF1096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1096_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 679; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 98 - 853
Target Start/End: Complemental strand, 2083977 - 2083221
Alignment:
| Q |
98 |
ggatgttgtgcagctcgagtctcagaagacctttttggaggaagagttggggatttttaaggagaaactgagggagtttatgagggatgatgaaattgag |
197 |
Q |
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| T |
2083977 |
ggatgttgtgcagctcgagtctcagaagacctttttggaggaagagttggggatttttaaggagaaactgagggagtttatgagggatgatgaaattgag |
2083878 |
T |
|
| Q |
198 |
ttaattgaaggtgctgattttgctagggagttttgtaatttctctgttgaatatgatctagatgattctttagatgatactgcatcacactaaatggaaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2083877 |
ttaattgaaggtgctgattttgctagggagttttgtaatttctctgttgaatatgatctagatgattctttagatgatactgcatcacactaaatggaaa |
2083778 |
T |
|
| Q |
298 |
tgttctcatctgtctcatagttgctaagtggaaactccttttgcatcatttttcttcttaccattgtaaattgtatttatcccatcaatgaatctaaatt |
397 |
Q |
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| T |
2083777 |
tgttctcatctgtctcatagttgctaagtggaaactccttttgcatcatttttcttcttaccattgtaaattgtatttatcccatcaatgaatctaaatt |
2083678 |
T |
|
| Q |
398 |
atccaataattattgtgatatgataagtttgtatcttttgtcgtagtggaatggatttcaagtgatccaactttcatgtttatgttactttagttttgtg |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2083677 |
atccaataattattgtgatatgataagtttgtatcttttgtcgtagtggaatggatttcaagtgatccaactttcatgtttatgttactttagttttgtg |
2083578 |
T |
|
| Q |
498 |
aatgaatttcatgaagcacttgacattgcaagcatctgattatggttttaggcatgcaatactgtgtacatatgctgtagtggattagtctctcaagttt |
597 |
Q |
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| T |
2083577 |
aatgaatttcatgaagcacttgacattgcaagcatctgattatggttttaggcatgcaatactgtgtgcatgtgctgtagtggattagtctctcaagttt |
2083478 |
T |
|
| Q |
598 |
cagtttcagctagactagtgtaaagttgattttcgaataattgcatttgg-acacaacattgcaaagatgggggtgtgtgtaaactggtaacaatgtgcc |
696 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2083477 |
cagtttcagctagactagtgtaaagttgatttttgaataattgcatttggaacaaaacattgcaaagat-ggggtgtgtgtaaactggtaacaatgtgcc |
2083379 |
T |
|
| Q |
697 |
ctttttcatattgttgtttttgataactttattgtaaatttgcctcaattttatggtttactgatctgttatgta-tgtttggaggaatttcatcgtgct |
795 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
2083378 |
ctttttcatattgttgtttttgataactttattgtaaatttgcctcaattttatggcttactgatctgttatgtattgtttggaggaatttcattgtgct |
2083279 |
T |
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| Q |
796 |
tttgattaatgggannnnnnnnngtcctccaaatcaagctttcgactcaacctatgat |
853 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
2083278 |
tttgattaatgggatttttttttgtcctccaaatcaagctttcgactcaacctgtgat |
2083221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 7e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 457 - 550
Target Start/End: Complemental strand, 9670612 - 9670519
Alignment:
| Q |
457 |
aagtgatccaactttcatgtttatgttactttagttttgtgaatgaatttcatgaagcacttgacattgcaagcatctgattatggttttaggc |
550 |
Q |
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||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9670612 |
aagtgatccaactttcatgtttatgctacattagtcttgtgaatgaatttcatgaagcacttgacattgcaagcatctggttatggttttaggc |
9670519 |
T |
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