View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1096_low_10 (Length: 344)
Name: NF1096_low_10
Description: NF1096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1096_low_10 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 3 - 336
Target Start/End: Complemental strand, 7303448 - 7303115
Alignment:
| Q |
3 |
agcagcaccacagacactgaaaaaacaccaaatacatgaaactcccctttttgaatctaatgttttaattttaatacatgaaactaattttaatacatga |
102 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7303448 |
agcaacacaacaaacactgaaaaaacaccaaatacatgaaactcccctttttgaatctaatgttttaattttaatacatgaaactaattttaatacatga |
7303349 |
T |
|
| Q |
103 |
ccagcagcactataacacatcagaaactaatattttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagcaatattaatatc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7303348 |
ccagcagcactataacacatcagaaactaatattttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagcaatattaatatc |
7303249 |
T |
|
| Q |
203 |
tcaagtttaactttagcaacgttatatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatct |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7303248 |
tcaagtttaactttagcaacgttatatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatct |
7303149 |
T |
|
| Q |
303 |
tcttcaccaaataagtcatgcatgtcttcatctc |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
7303148 |
tcttcaccaaataagtcatgcatgtcttcatctc |
7303115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 3 - 336
Target Start/End: Original strand, 16444737 - 16445070
Alignment:
| Q |
3 |
agcagcaccacagacactgaaaaaacaccaaatacatgaaactcccctttttgaatctaatgttttaattttaatacatgaaactaattttaatacatga |
102 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16444737 |
agcaacacaacaaacactgaaaaaacaccaaatacatgaaactcccctttttgaatctaatgttttaattttaatacatgaaactaattttaatacatga |
16444836 |
T |
|
| Q |
103 |
ccagcagcactataacacatcagaaactaatattttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagcaatattaatatc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16444837 |
ccagcagcactataacacatcagaaactaatattttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagcaatattaatatc |
16444936 |
T |
|
| Q |
203 |
tcaagtttaactttagcaacgttatatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatct |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16444937 |
tcaagtttaactttagcaacgttatatctcaaacaatgatgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatct |
16445036 |
T |
|
| Q |
303 |
tcttcaccaaataagtcatgcatgtcttcatctc |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
16445037 |
tcttcaccaaataagtcatgcatgtcttcatctc |
16445070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 226 - 335
Target Start/End: Original strand, 40288294 - 40288403
Alignment:
| Q |
226 |
atatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcat |
325 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| || || |||||||||||||||||||| |||||||||| ||| |
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|
| T |
40288294 |
atatctcaaacaatggtgtgtaatagtttgaattagttgtctcaccttcatttaatgtataactcatatcttcatcttcttcactaaataagtcacccat |
40288393 |
T |
|
| Q |
326 |
gtcttcatct |
335 |
Q |
| |
|
|||||||||| |
|
|
| T |
40288394 |
gtcttcatct |
40288403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 3 - 336
Target Start/End: Complemental strand, 6123626 - 6123293
Alignment:
| Q |
3 |
agcagcaccacagacactgaaaaaacaccaaatacatgaaactcccctttttgaatctaatgttttaattttaatacatgaaactaattttaatacatga |
102 |
Q |
| |
|
|||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6123626 |
agcaacacaacaaacactgaaaaaacaccaaatacatgaaactcccctttttgaatctaatgttttaattttaatacatgaaactaattttaatacatga |
6123527 |
T |
|
| Q |
103 |
ccagcagcactataacacatcagaaactaatattttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagcaatattaatatc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6123526 |
ccagcagcactataacacatcagaaactaatattttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagcaatattaatatc |
6123427 |
T |
|
| Q |
203 |
tcaagtttaactttagcaacgttatatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatct |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6123426 |
tcaagtttaactttagcaacgttatatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatct |
6123327 |
T |
|
| Q |
303 |
tcttcaccaaataagtcatgcatgtcttcatctc |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
6123326 |
tcttcaccaaataagtcatgcatgtcttcatctc |
6123293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 226 - 335
Target Start/End: Complemental strand, 4202028 - 4201919
Alignment:
| Q |
226 |
atatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcat |
325 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
4202028 |
atatctcaaacaatggtgtgtaatagtttgaattaattgtctcaccttcatttaatgtataacccatatcttcatcttcttcactaaataagtcacccat |
4201929 |
T |
|
| Q |
326 |
gtcttcatct |
335 |
Q |
| |
|
|||||||||| |
|
|
| T |
4201928 |
gtcttcatct |
4201919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 226 - 335
Target Start/End: Complemental strand, 24741228 - 24741119
Alignment:
| Q |
226 |
atatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcat |
325 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| | |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
24741228 |
atatctcaaacaatggtgtgtaatagtttgaattagctgtctcaccttcatttaatgtataacccatatcttcatcttcttcactaaataagtcacccat |
24741129 |
T |
|
| Q |
326 |
gtcttcatct |
335 |
Q |
| |
|
|||||||||| |
|
|
| T |
24741128 |
gtcttcatct |
24741119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 226 - 335
Target Start/End: Original strand, 25997359 - 25997468
Alignment:
| Q |
226 |
atatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcat |
325 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
25997359 |
atatctcaaacaatggtgtgtaatagtttgaattagttgtctcaccttcatttaatgtataacccatatcttcatcttcttcactaaataagtcacccat |
25997458 |
T |
|
| Q |
326 |
gtcttcatct |
335 |
Q |
| |
|
|||||||||| |
|
|
| T |
25997459 |
gtcttcatct |
25997468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 226 - 333
Target Start/End: Original strand, 10369642 - 10369749
Alignment:
| Q |
226 |
atatctcaaacaatggtgtataatagtttgaatcaattgtctcaccttcatttaatgcatcacccatatcttcatcttcttcaccaaataagtcatgcat |
325 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||||| || |
|
|
| T |
10369642 |
atatcttaaacaatggtgtataatagtttgaataaattgtctcaccttcatttaatgtataacccatatcttcatattcttcactaaataagtcacatat |
10369741 |
T |
|
| Q |
326 |
gtcttcat |
333 |
Q |
| |
|
|||||||| |
|
|
| T |
10369742 |
gtcttcat |
10369749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 10369443 - 10369525
Alignment:
| Q |
131 |
aatattttaactttaatactactacaccactttatttgaatcttcttcaatacaaccagcaatattaatatctcaagtttaacttt |
216 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||||||| ||||||||| |||||| | |||||| ||||||||||||| | |||||| |
|
|
| T |
10369443 |
aatattttaattttaatactac---accagtttattttaatcttctttaatacagcaagcaatgttaatatctcaagctaaacttt |
10369525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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