View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1096_low_11 (Length: 344)
Name: NF1096_low_11
Description: NF1096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1096_low_11 |
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| [»] chr6 (4 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 72 - 344
Target Start/End: Original strand, 8042351 - 8042623
Alignment:
| Q |
72 |
tgcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttgcctttgctggacacagtgtggtgctggagatccaagcaacaattccgtct |
171 |
Q |
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|||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8042351 |
tgcaggatctgtcttttatttctttaatgcacttggctctgttgcatttgcctttgctggacacattgtggtgctggagatccaagcaacaattccgtct |
8042450 |
T |
|
| Q |
172 |
acacctgagaaaccatcaaagggtccaatgtggaaaggagttgttgttgcctacattattgttgctttatgctacttccctgttgctattatcggttatt |
271 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8042451 |
acaccggagaaaccatctaagggtccaatgtggaaaggagttgttgttgcctacattattgttgctttgtgctacttccctgttgctattatcggttatt |
8042550 |
T |
|
| Q |
272 |
ggatatttggcaatgaggttaaggataatatcctcgtgtcattggaaaacccagcttggcttattgcaatggc |
344 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8042551 |
ggatatttggcaatggggttaaggataatatcctcgtgtctttggaaaacccagcttggcttattgcaatggc |
8042623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 72 - 344
Target Start/End: Complemental strand, 7971362 - 7971090
Alignment:
| Q |
72 |
tgcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttgcctttgctggacacagtgtggtgctggagatccaagcaacaattccgtct |
171 |
Q |
| |
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|||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7971362 |
tgcaggatctgtctttaatttctttaatgcacttggctctgttgcatttgcctttgccggacacaacgtggtgctggagatccaagcaacaattccgtct |
7971263 |
T |
|
| Q |
172 |
acacctgagaaaccatcaaagggtccaatgtggaaaggagttgttgttgcctacattattgttgctttatgctacttccctgttgctattatcggttatt |
271 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| |||||||||| |||||||| ||||||||| |||||||||||| |
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| T |
7971262 |
acacctgagaaaccatctaagggtccaatgtggaaaggagttattgttgcatacattgttgttgctttgtgctactttcctgttgctcttatcggttatt |
7971163 |
T |
|
| Q |
272 |
ggatatttggcaatgaggttaaggataatatcctcgtgtcattggaaaacccagcttggcttattgcaatggc |
344 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7971162 |
ggatatttggcaatggggttaaggataatatcctcgtgtctttggaaaacccagcttggcttattgcaatggc |
7971090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 72 - 341
Target Start/End: Original strand, 8032447 - 8032716
Alignment:
| Q |
72 |
tgcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttgcctttgctggacacagtgtggtgctggagatccaagcaacaattccgtct |
171 |
Q |
| |
|
||||| ||| |||||| |||||||||||||||||||| ||||||||||||||| ||||||||| | ||||||||| |||||||||||||||||||| ||| |
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| T |
8032447 |
tgcagaatcagtctttaatttctttaatgcactcggctctgttgcatttgcctatgctggacataatgtggtgctcgagatccaagcaacaattccatct |
8032546 |
T |
|
| Q |
172 |
acacctgagaaaccatcaaagggtccaatgtggaaaggagttgttgttgcctacattattgttgctttatgctacttccctgttgctattatcggttatt |
271 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||| |
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| T |
8032547 |
acacctgagaaaccatctaagggtccaatgtggagaggtgttgttgttgcctacattgttgttgctttgtgctactttcctgttgctattattggttatt |
8032646 |
T |
|
| Q |
272 |
ggatatttggcaatgaggttaaggataatatcctcgtgtcattggaaaacccagcttggcttattgcaat |
341 |
Q |
| |
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|| | ||||| ||||| |||||||||||| |||| | || |||||||| |||| |||||| || ||||| |
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| T |
8032647 |
gggtgtttggtaatgaagttaaggataatgtcctaatctctttggaaaaaccagtttggctcatcgcaat |
8032716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 73 - 291
Target Start/End: Complemental strand, 7978294 - 7978076
Alignment:
| Q |
73 |
gcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttgcctttgctggacacagtgtggtgctggagatccaagcaacaattccgtcta |
172 |
Q |
| |
|
|||||| | |||||||| |||||||||||||| ||| || |||| ||||||| ||||||||||| ||||||| | ||||||||||||||||||||||| | |
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| T |
7978294 |
gcaggaacagtctttgacttctttaatgcacttggcactattgcttttgcctatgctggacacaatgtggtgttagagatccaagcaacaattccgtcga |
7978195 |
T |
|
| Q |
173 |
cacctgagaaaccatcaaagggtccaatgtggaaaggagttgttgttgcctacattattgttgctttatgctacttccctgttgctattatcggttattg |
272 |
Q |
| |
|
|||| ||||||||||| |||| ||||||||||| ||||||||||||||| |||||| |||||||||| || ||||||||||||||| |||| ||||| || |
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| T |
7978194 |
caccggagaaaccatccaaggttccaatgtggagaggagttgttgttgcatacattgttgttgctttgtgttacttccctgttgctcttattggttactg |
7978095 |
T |
|
| Q |
273 |
gatatttggcaatgaggtt |
291 |
Q |
| |
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||||||||| ||||||||| |
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| T |
7978094 |
gatatttggaaatgaggtt |
7978076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 72 - 344
Target Start/End: Complemental strand, 41381799 - 41381527
Alignment:
| Q |
72 |
tgcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttgcctttgctggacacagtgtggtgctggagatccaagcaacaattccgtct |
171 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| || ||||||| ||||||| ||| ||||||| ||||||| |||| || ||| | ||||| || ||| |
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| T |
41381799 |
tgcaggatctgtctttaatttctttaatgcacttggttctgttgcttttgcctatgcaggacacaatgtggtgttggaaattcaatctacaatcccatct |
41381700 |
T |
|
| Q |
172 |
acacctgagaaaccatcaaagggtccaatgtggaaaggagttgttgttgcctacattattgttgctttatgctacttccctgttgctattatcggttatt |
271 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| | |||||||||| |||||||||| |||||||| |||||||||||||||||||||| |
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| T |
41381699 |
acacctgagaaaccatctaagggtccaatgtggaaaggagttatctttgcctacatggttgttgctttgtgctactttcctgttgctattatcggttatt |
41381600 |
T |
|
| Q |
272 |
ggatatttggcaatgaggttaaggataatatcctcgtgtcattggaaaacccagcttggcttattgcaatggc |
344 |
Q |
| |
|
| ||||||||||||||||| |||||||||||| |||| |||||||| ||||||||||||||||||||||| |
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| T |
41381599 |
atgtgtttggcaatgaggttaaagataatatcctcatgtctttggaaaaaccagcttggcttattgcaatggc |
41381527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 111 - 285
Target Start/End: Original strand, 43854448 - 43854622
Alignment:
| Q |
111 |
tgttgcatttgcctttgctggacacagtgtggtgctggagatccaagcaacaattccgtctacacctgagaaaccatcaaagggtccaatgtggaaagga |
210 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||| ||||||| ||||||||||| || || ||||| ||||||||||| |||||||||||||||| |||| |
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| T |
43854448 |
tgttgcatttgcctatgctggacacaatgtggtgttggagattcaagcaacaatcccttccacaccagagaaaccatccaagggtccaatgtggagagga |
43854547 |
T |
|
| Q |
211 |
gttgttgttgcctacattattgttgctttatgctacttccctgttgctattatcggttattggatatttggcaat |
285 |
Q |
| |
|
||| | | || || ||| |||| ||||| || || |||||||||||| |||| || |||||||| ||||||||| |
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| T |
43854548 |
gttttattagcatatattgttgtagctttgtgttatttccctgttgctcttattggatattggatgtttggcaat |
43854622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 73 - 341
Target Start/End: Complemental strand, 2659 - 2391
Alignment:
| Q |
73 |
gcaggatctgtctttgatttctttaatgcactcggcgctgttgcatttgcctttgctggacacagtgtggtgctggagatccaagcaacaattccgtcta |
172 |
Q |
| |
|
|||| ||| |||||| |||||||||||||||| ||| || | || ||||||| ||| ||||||| |||||| |||||||||||||||||||||||||||| |
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| T |
2659 |
gcagaatcagtctttaatttctttaatgcacttggctctatcgcgtttgcctatgccggacacaatgtggtactggagatccaagcaacaattccgtcta |
2560 |
T |
|
| Q |
173 |
cacctgagaaaccatcaaagggtccaatgtggaaaggagttgttgttgcctacattattgttgctttatgctacttccctgttgctattatcggttattg |
272 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| |||||||| | |||||||| ||||||||||| || |||||||| |
|
|
| T |
2559 |
cacctgagaaaccatctaagggtccaatgtggagaggtgttgttgttgcctacattgttgttgctgtgtgctactttcctgttgctataattggttattg |
2460 |
T |
|
| Q |
273 |
gatatttggcaatgaggttaaggataatatcctcgtgtcattggaaaacccagcttggcttattgcaat |
341 |
Q |
| |
|
||| ||||||||| | |||||||||||| ||||| | || |||||||| || |||||||| |||||||| |
|
|
| T |
2459 |
gatgtttggcaatcaagttaaggataatgtcctcatctctttggaaaaacctgcttggctcattgcaat |
2391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 74 - 281
Target Start/End: Complemental strand, 14198244 - 14198037
Alignment:
| Q |
74 |
caggatctgtctttgatttctttaatgcactcggcgctgttgcatttgcctttgctggacacagtgtggtgctggagatccaagcaacaattccgtctac |
173 |
Q |
| |
|
||||| ||||||||| |||||| ||||| || || | ||| || ||||| | ||| ||||||| |||||| | || ||||||||||||||||| ||||| |
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| T |
14198244 |
caggaactgtctttggtttcttcaatgcccttggagatgtggcttttgcttatgccggacacaacgtggtgttagaaatccaagcaacaattccatctac |
14198145 |
T |
|
| Q |
174 |
acctgagaaaccatcaaagggtccaatgtggaaaggagttgttgttgcctacattattgttgctttatgctacttccctgttgctattatcggttattgg |
273 |
Q |
| |
|
||| || |||||||| |||||||||||||||| |||||| |||| ||||| || |||| ||||| |||||||| || |||||| | || ||||||||| |
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|
| T |
14198144 |
accggaaaaaccatctaagggtccaatgtggagaggagtgattgtagcctatatagttgtagctttgtgctactttccagttgctctcattggttattgg |
14198045 |
T |
|
| Q |
274 |
atatttgg |
281 |
Q |
| |
|
|| ||||| |
|
|
| T |
14198044 |
atgtttgg |
14198037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 22550592 - 22550647
Alignment:
| Q |
154 |
caagcaacaattccgtctacacctgagaaaccatcaaagggtccaatgtggaaagg |
209 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||| |||||||||||||| |
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| T |
22550592 |
caagcaacaattccatcaacacctgagaaaccatcaaaaataccaatgtggaaagg |
22550647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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