View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1096_low_12 (Length: 343)
Name: NF1096_low_12
Description: NF1096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1096_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 81 - 339
Target Start/End: Original strand, 2006350 - 2006608
Alignment:
| Q |
81 |
gcttggacttgcttgattcctcaggtcttttaggtgccaagcctgctcctacacctttagatcaatatttactatatcaaatatgttagtgaaagatttt |
180 |
Q |
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| T |
2006350 |
gcttggacttgcttgattcctcaggtcttttaggtgccaagcctgctcctacacctttagatcaatatttactatatcaaatatattagtgaaagatttt |
2006449 |
T |
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| Q |
181 |
cctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggagtctgtttctatggtctgcaagaaattcctttccattacaaacc |
280 |
Q |
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| T |
2006450 |
cctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggagtctgtttctatggtctgcaagaaattcctttccattacaaacc |
2006549 |
T |
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| Q |
281 |
gagttaaagtctctctaacagtacatgatcccactgttccattccttcctatgctactc |
339 |
Q |
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| T |
2006550 |
gagttaaagcatctctaacagtacatgatcccactgttccattccttcctcggctactc |
2006608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 138 - 327
Target Start/End: Complemental strand, 1743975 - 1743786
Alignment:
| Q |
138 |
tagatcaatatttactatatcaaatatgttagtgaaagattttcctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggag |
237 |
Q |
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| T |
1743975 |
tagatcaacatttattatatcaaatatgttattgaaagattttcctcaagaatgttgggaatcaatcttcaaattccttggccaaggaaaagatttggag |
1743876 |
T |
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| Q |
238 |
tctgtttctatggtctgcaagaaattcctttccattacaaaccgagttaaagtctctctaacagtacatgatcccactgttccattcctt |
327 |
Q |
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| T |
1743875 |
tctgtttctatggtctgcaagaaattcctttccattacaaaccaagtgaaattttctttaacaatacatgattccactattctattcctt |
1743786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 1498231 - 1498300
Alignment:
| Q |
210 |
attccttggccaaggagatgatttggagtctgtttctatggtctgcaagaaattcctttccattacaaac |
279 |
Q |
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| T |
1498231 |
attccttggccaaagaagtaatttgaagtctgtttttatggtttgcaagaaattccattacattaaaaac |
1498300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 81 - 141
Target Start/End: Complemental strand, 25419864 - 25419804
Alignment:
| Q |
81 |
gcttggacttgcttgattcctcaggtcttttaggtgccaagcctgctcctacacctttaga |
141 |
Q |
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| T |
25419864 |
gcttggacttgcttgattcctcaggtcttttaggtgccaagcctgctcctacacctttaga |
25419804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 5373571 - 5373518
Alignment:
| Q |
89 |
ttgcttgattcctcaggtcttttaggtgccaagcctgctcctacacctttagat |
142 |
Q |
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| T |
5373571 |
ttgcttgaatcctcaggtcttctaggtgccaaacctacttctacacctctagat |
5373518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 160 - 279
Target Start/End: Original strand, 44577331 - 44577455
Alignment:
| Q |
160 |
aatatgttagtgaaagatttt-cctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggagtctgtttc----tatggtctg |
254 |
Q |
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| T |
44577331 |
aatatgttagtgaaatttttttcctgaagaatgctaggaatcagtcttcaaattccttagacaaagacatgatttggagtttgtttcaatatattgtctg |
44577430 |
T |
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| Q |
255 |
caagaaattcctttccattacaaac |
279 |
Q |
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|||| ||||| ||| |||||||||| |
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| T |
44577431 |
caagcaattcgtttacattacaaac |
44577455 |
T |
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