View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1096_low_13 (Length: 325)

Name: NF1096_low_13
Description: NF1096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1096_low_13
NF1096_low_13
[»] chr8 (12 HSPs)
chr8 (1-225)||(3782975-3783192)
chr8 (224-272)||(5689590-5689637)
chr8 (226-272)||(17982976-17983021)
chr8 (226-264)||(19945158-19945196)
chr8 (226-272)||(44304178-44304224)
chr8 (225-272)||(30143663-30143709)
chr8 (226-272)||(1746018-1746064)
chr8 (226-272)||(4731981-4732026)
chr8 (226-272)||(6599288-6599333)
chr8 (226-272)||(6674741-6674786)
chr8 (226-263)||(2628071-2628108)
chr8 (228-272)||(41366420-41366463)
[»] chr6 (9 HSPs)
chr6 (226-272)||(16452127-16452173)
chr6 (224-272)||(22963506-22963554)
chr6 (224-272)||(23824839-23824887)
chr6 (226-272)||(2171326-2171372)
chr6 (226-272)||(5406002-5406048)
chr6 (226-272)||(5408869-5408915)
chr6 (226-272)||(5410327-5410373)
chr6 (226-272)||(5413194-5413240)
chr6 (226-272)||(26954091-26954136)
[»] chr4 (7 HSPs)
chr4 (226-272)||(5369881-5369927)
chr4 (226-272)||(29999628-29999674)
chr4 (226-272)||(48143371-48143417)
chr4 (226-272)||(54199708-54199753)
chr4 (226-272)||(45686987-45687032)
chr4 (226-272)||(48893443-48893488)
chr4 (228-272)||(56178438-56178481)
[»] chr3 (10 HSPs)
chr3 (226-272)||(9635923-9635969)
chr3 (226-270)||(9634621-9634665)
chr3 (226-272)||(19683687-19683733)
chr3 (226-272)||(5236257-5236302)
chr3 (226-272)||(5257943-5257989)
chr3 (226-272)||(9581606-9581652)
chr3 (226-272)||(22834807-22834852)
chr3 (226-272)||(31314763-31314808)
chr3 (226-272)||(40734820-40734865)
chr3 (226-270)||(9666270-9666313)
[»] chr1 (6 HSPs)
chr1 (226-272)||(20762991-20763037)
chr1 (226-272)||(833970-834015)
chr1 (226-272)||(8550584-8550629)
chr1 (226-260)||(13316151-13316185)
chr1 (226-272)||(37503362-37503407)
chr1 (226-271)||(40122001-40122045)
[»] chr2 (10 HSPs)
chr2 (225-272)||(36205463-36205510)
chr2 (226-263)||(32289900-32289937)
chr2 (226-272)||(723547-723592)
chr2 (226-272)||(2334218-2334263)
chr2 (226-272)||(24885908-24885953)
chr2 (226-272)||(34139573-34139618)
chr2 (226-272)||(36773881-36773926)
chr2 (226-272)||(36987875-36987920)
chr2 (116-182)||(37961253-37961319)
chr2 (226-272)||(42362668-42362713)
[»] chr7 (4 HSPs)
chr7 (226-272)||(29991376-29991422)
chr7 (226-272)||(35854239-35854285)
chr7 (226-272)||(38671025-38671070)
chr7 (226-272)||(41648814-41648859)
[»] chr5 (7 HSPs)
chr5 (226-272)||(9789021-9789067)
chr5 (226-272)||(30182911-30182957)
chr5 (226-263)||(18441441-18441478)
chr5 (225-272)||(25413083-25413130)
chr5 (226-260)||(26178221-26178255)
chr5 (226-272)||(31183296-31183341)
chr5 (226-270)||(5887235-5887278)
[»] scaffold1519 (1 HSPs)
scaffold1519 (226-272)||(1239-1285)
[»] scaffold0286 (1 HSPs)
scaffold0286 (226-272)||(11889-11935)
[»] scaffold0002 (1 HSPs)
scaffold0002 (226-272)||(434857-434903)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 8e-92; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3783192 - 3782975
Alignment:
Q  1 attagagggacgacgcgtgtgtcattgtgttcagtatgaggagaaggcaagttcggaaagnnnnnnnnnngggtgcaaatttttaacatcttgtgaagaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||    
T  3783192 attagagggacgacgcgtgtgtcattgtgttcagtatgaggagaaggcaagttcggaaa-------aaaagggtgcaaatttttaacatcttgtgaagaa 3783100  T
Q  101 tctgaaataaggaggttgaagtttgctaaggattcagcaacggtgaaggagagaaagtctccattgaggtagcgtatataagagggagcattttcggaat 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  3783099 tctgaaataaggaggttgaagtttgctaaggattcagcaatggtgaaggagagagagtctccattgaggtagcgtatataagggggaacattttcggaat 3783000  T
Q  201 gtgaaggaattataagattggaaga 225  Q
    |||||||||||||||||||||||||    
T  3782999 gtgaaggaattataagattggaaga 3782975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 5689637 - 5689590
Alignment:
Q  224 gatgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  5689637 gatgttgtgaattccga-ctcaaaatcacaccaatacaaactatgatgt 5689590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 17983021 - 17982976
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||    
T  17983021 tgttgtgaattccgatctcaaa-tcacaccaatacaaactatgatgt 17982976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 19945158 - 19945196
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaac 264  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  19945158 tgttgtgaattccggtctcaaaatcacaccaatacaaac 19945196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 44304224 - 44304178
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||| ||||||||||||||||||||| || |||||||    
T  44304224 tgttgtgaattccgttctcaaaatcacaccaatacatactatgatgt 44304178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 272
Target Start/End: Complemental strand, 30143709 - 30143663
Alignment:
Q  225 atgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    ||||||||||||| || ||||||||||||||||||||||| |||||||    
T  30143709 atgttgtgaattcaga-ctcaaaatcacaccaatacaaactatgatgt 30143663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 1746018 - 1746064
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    ||||||||||| || |||||||||||||||||||| ||| |||||||    
T  1746018 tgttgtgaatttcggtctcaaaatcacaccaatacgaactatgatgt 1746064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 4732026 - 4731981
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  4732026 tgttgtgaattc-gaactcaaaatcacaccaatacaaacaatgatgt 4731981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 6599333 - 6599288
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  6599333 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 6599288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 6674786 - 6674741
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  6674786 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 6674741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 2628108 - 2628071
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaa 263  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  2628108 tgttgtgaattccgatctcgaaaccacaccaatacaaa 2628071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 41366420 - 41366463
Alignment:
Q  228 ttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||| || ||||||||||||||||||||||| |||||||    
T  41366420 ttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 41366463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 16452127 - 16452173
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||    
T  16452127 tgttgtgaattccgatctcaaaatcacaccaatacgaactatgatgt 16452173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 22963506 - 22963554
Alignment:
Q  224 gatgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||||   ||||||||||||||||||||||| |||||||    
T  22963506 gatgttgtgaattccagactcaaaatcacaccaatacaaactatgatgt 22963554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 23824887 - 23824839
Alignment:
Q  224 gatgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||||   ||||||||||||||||||||||| |||||||    
T  23824887 gatgttgtgaattccagactcaaaatcacaccaatacaaactatgatgt 23824839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 2171326 - 2171372
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||| ||||||| |||||||||||| ||| |||||||    
T  2171326 tgttgtgaattccggtctcaaagtcacaccaatacgaactatgatgt 2171372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 5406002 - 5406048
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||| ||| ||| |||||||||||||||| |||||||    
T  5406002 tgttgtgaattccggtcttaaagtcacaccaatacaaactatgatgt 5406048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 5408869 - 5408915
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||  ||||||| |||||||||||||||| |||||||    
T  5408869 tgttgtgaattccagtctcaaagtcacaccaatacaaactatgatgt 5408915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 5410327 - 5410373
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||| ||| ||| |||||||||||||||| |||||||    
T  5410327 tgttgtgaattccggtcttaaagtcacaccaatacaaactatgatgt 5410373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 5413194 - 5413240
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||  ||||||| |||||||||||||||| |||||||    
T  5413194 tgttgtgaattccagtctcaaagtcacaccaatacaaactatgatgt 5413240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 26954091 - 26954136
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  26954091 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 26954136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 5369881 - 5369927
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  5369881 tgttgtgaattccggtctcaaaatcacaccaatacaaactatgatgt 5369927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 29999628 - 29999674
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  29999628 tgttgtgaattccggtctcaaaatcacaccaatacaaactatgatgt 29999674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 48143417 - 48143371
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||||    
T  48143417 tgttgtgaattccggactcaaaatcacaccaatacaaactatgatgt 48143371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 54199708 - 54199753
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || |||||||||||||||||||||||||||||||    
T  54199708 tgttgtgaattcgga-ctcaaaatcacaccaatacaaacgatgatgt 54199753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 45686987 - 45687032
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  45686987 tgttgtgaattcaga-ctcaaaatcacaccaatacaaactatgatgt 45687032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 48893443 - 48893488
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  48893443 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 48893488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 56178438 - 56178481
Alignment:
Q  228 ttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||| || ||||||||||||||||||||||| |||||||    
T  56178438 ttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 56178481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 9635923 - 9635969
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  9635923 tgttgtgaattccggtctcaaaatcacaccaatacaaactatgatgt 9635969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 9634621 - 9634665
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgat 270  Q
    |||||||||||||| |||||||||||||||||||||||| |||||    
T  9634621 tgttgtgaattccggtctcaaaatcacaccaatacaaactatgat 9634665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 19683687 - 19683733
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||||    
T  19683687 tgttgtgaattccggtctcaaactcacaccaatacaaactatgatgt 19683733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 5236257 - 5236302
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  5236257 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 5236302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 5257943 - 5257989
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||| ||||||| |||||||||||| ||| |||||||    
T  5257943 tgttgtgaattccggtctcaaagtcacaccaatacgaactatgatgt 5257989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 9581652 - 9581606
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    ||||||||||||||  |||||||||||||||||| |||| |||||||    
T  9581652 tgttgtgaattccggactcaaaatcacaccaatataaactatgatgt 9581606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 22834807 - 22834852
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  22834807 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 22834852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 31314808 - 31314763
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||||    
T  31314808 tgttgtgaataccga-ctcaaaatcacaccaatacaaactatgatgt 31314763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 40734865 - 40734820
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| | |||||||||||||||||||||||| |||||||    
T  40734865 tgttgtgaattcgg-tctcaaaatcacaccaatacaaactatgatgt 40734820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 9666270 - 9666313
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgat 270  Q
    |||||||||||| || ||||||||||||||||||||||| |||||    
T  9666270 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgat 9666313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 20763037 - 20762991
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||    
T  20763037 tgttgtgaattccggtctcaaaatcacaccaatacaaactatgatgt 20762991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 833970 - 834015
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  833970 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 834015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 8550584 - 8550629
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  8550584 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 8550629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 260
Target Start/End: Original strand, 13316151 - 13316185
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatac 260  Q
    |||||||||||||| ||||||||||||||||||||    
T  13316151 tgttgtgaattccggtctcaaaatcacaccaatac 13316185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 37503362 - 37503407
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  37503362 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 37503407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 40122001 - 40122045
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatg 271  Q
    |||||||||||| || ||||||||||||||||||||||| ||||||    
T  40122001 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatg 40122045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 272
Target Start/End: Original strand, 36205463 - 36205510
Alignment:
Q  225 atgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    ||||||||||||||| |||||||||||||| ||||||||| |||||||    
T  36205463 atgttgtgaattccggtctcaaaatcacactaatacaaactatgatgt 36205510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 263
Target Start/End: Complemental strand, 32289937 - 32289900
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaa 263  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  32289937 tgttgtgaattccgatctcaaaaccacaccaatacaaa 32289900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 723547 - 723592
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  723547 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 723592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 2334218 - 2334263
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  2334218 tgttgtgaattcaga-ctcaaaatcacaccaatacaaactatgatgt 2334263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 24885953 - 24885908
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  24885953 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 24885908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 34139573 - 34139618
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  34139573 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 34139618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 36773926 - 36773881
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| ||| |||||||||||||||||||||| |||||||    
T  36773926 tgttgtgaattcggat-tcaaaatcacaccaatacaaactatgatgt 36773881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 36987875 - 36987920
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  36987875 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 36987920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 37961253 - 37961319
Alignment:
Q  116 ttgaagtttgctaaggattcagcaacggtgaaggagagaaagtctccattgaggtagcgtatataag 182  Q
    ||||||| |||| |||||||||| ||||||||||||| | ||||| ||| |||||| ||||| ||||    
T  37961253 ttgaagtctgctgaggattcagctacggtgaaggagatagagtcttcatcgaggtaacgtatgtaag 37961319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 42362713 - 42362668
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  42362713 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 42362668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 29991422 - 29991376
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||||    
T  29991422 tgttgtgaattccgttctcaaagtcacaccaatacaaactatgatgt 29991376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 35854285 - 35854239
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||  |||||||||||||| ||||||||| |||||||    
T  35854285 tgttgtgaattccagtctcaaaatcacacaaatacaaactatgatgt 35854239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 38671025 - 38671070
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  38671025 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 38671070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 41648814 - 41648859
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  41648814 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgatgt 41648859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Original strand, 9789021 - 9789067
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    ||||||||||||||||||||||| ||||||||||||||  |||||||    
T  9789021 tgttgtgaattccgatctcaaaaccacaccaatacaaagtatgatgt 9789067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 30182957 - 30182911
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||| ||||||||||||||||| |||||| |||||||    
T  30182957 tgttgtgaattccggtctcaaaatcacaccaaaacaaactatgatgt 30182911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 18441441 - 18441478
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaa 263  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  18441441 tgttgtgaattccgatctcaaaaccacaccaatacaaa 18441478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 272
Target Start/End: Complemental strand, 25413130 - 25413083
Alignment:
Q  225 atgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    ||||||||||||||| | |||||||||||||||||| ||| |||||||    
T  25413130 atgttgtgaattccggtttcaaaatcacaccaatacgaactatgatgt 25413083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 26178255 - 26178221
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatac 260  Q
    ||||||||||||||||||||||| |||||||||||    
T  26178255 tgttgtgaattccgatctcaaaaccacaccaatac 26178221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 31183341 - 31183296
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||    
T  31183341 tgttgtgaattcgga-ctcaaaatcacaccaatacaaaccatgatgt 31183296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 5887235 - 5887278
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgat 270  Q
    |||||||||||| || ||||||||||||||||||||||| |||||    
T  5887235 tgttgtgaattcgga-ctcaaaatcacaccaatacaaactatgat 5887278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1519 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1519
Description:

Target: scaffold1519; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 1285 - 1239
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||| ||||||| |||||||||||| ||| |||||||    
T  1285 tgttgtgaattccggtctcaaagtcacaccaatacgaactatgatgt 1239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 11935 - 11889
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||| ||||||| |||||||||||| ||| |||||||    
T  11935 tgttgtgaattccggtctcaaagtcacaccaatacgaactatgatgt 11889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 434903 - 434857
Alignment:
Q  226 tgttgtgaattccgatctcaaaatcacaccaatacaaacgatgatgt 272  Q
    |||||||||||||| ||||||| |||||||||||| ||| |||||||    
T  434903 tgttgtgaattccgttctcaaagtcacaccaatacgaactatgatgt 434857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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