View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1096_low_15 (Length: 318)
Name: NF1096_low_15
Description: NF1096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1096_low_15 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 14444 - 14367
Alignment:
| Q |
104 |
aaaagaagtgagttgaatctgctttgttggtgcattaattttggatcaaagtctacatgtgttctcatattagaagga |
181 |
Q |
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| T |
14444 |
aaaagaagtgagttgaatctgctttgttggtgcattaattttggatcaaagtctacatgtgttctcatattagaagga |
14367 |
T |
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Target: scaffold0147; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 17895 - 17935
Alignment:
| Q |
181 |
aaaataaaatagcactataaagtccttttctaattaacaca |
221 |
Q |
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| T |
17895 |
aaaataaaatagcactataaagtccttttctaattaacaca |
17935 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 111
Target Start/End: Complemental strand, 46356791 - 46356762
Alignment:
| Q |
82 |
aataatatattgataacttgttaaaagaag |
111 |
Q |
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| T |
46356791 |
aataatatattgataacttgttaaaagaag |
46356762 |
T |
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