View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1096_low_16 (Length: 300)

Name: NF1096_low_16
Description: NF1096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1096_low_16
NF1096_low_16
[»] chr1 (10 HSPs)
chr1 (1-300)||(2288956-2289255)
chr1 (30-152)||(670986-671108)
chr1 (47-136)||(28239054-28239146)
chr1 (69-134)||(6326786-6326851)
chr1 (57-132)||(47569148-47569226)
chr1 (64-143)||(14508839-14508918)
chr1 (50-127)||(28231490-28231570)
chr1 (201-242)||(677086-677127)
chr1 (69-118)||(677216-677265)
chr1 (73-118)||(21159183-21159228)
[»] chr5 (1 HSPs)
chr5 (56-118)||(1717892-1717954)
[»] chr3 (2 HSPs)
chr3 (58-135)||(47924934-47925011)
chr3 (196-259)||(47925063-47925126)
[»] chr6 (2 HSPs)
chr6 (64-118)||(24934101-24934155)
chr6 (64-118)||(24941634-24941688)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 2288956 - 2289255
Alignment:
Q  1 tgagcagcaccacagaagccttaagttatatgatgatgtgtgtcataatcaggcatgatgttgttaacaatcattttagaatataaatcataggcttgga 100  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2288956 tgagcagcaacacacaagccttaagttatatgatgatgtgtgtcataatcaggcatgatgttgttaacaatcattttagaatataaatcataggcttgga 2289055  T
Q  101 ttacaagtctatccttgccgagcctgagtatgatttcgttatacaacaaaactatgtcatacatttcttgtctggtgtcaatctttagtaatagtacctg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2289056 ttacaagtctatccttgccgagcctgagtatgatttcgttatacaacaaaactatgtcatacatttcttgtctggtgtgaatctttagtaatagtacctg 2289155  T
Q  201 tctcagcaattgtatggctctttgagtttctccactataacataagccattaactagaatctgataagtatcactgttgaactgaaaaccacccttaagt 300  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2289156 tcccagcaattgtatggctctttgagtttctccactataacataagccattaactagaatctgataagtatcactgttgaactgaaaaccacccttaagt 2289255  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 152
Target Start/End: Original strand, 670986 - 671108
Alignment:
Q  30 atgatgatgtgtgtcataatcaggcatgatgttgttaacaatcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctgagt 129  Q
    ||||||||||||| || |||||| |  ||| |||||||||||||||| | |||||||| ||||| ||||| ||||||||||||| ||||  ||||||| |    
T  670986 atgatgatgtgtgacacaatcagactcgatcttgttaacaatcatttcaaaatataaaccatagccttggtttacaagtctatctttgcacagcctgaat 671085  T
Q  130 atgatttcgttatacaacaaaac 152  Q
    |||||||  |||| |||||||||    
T  671086 atgattttcttatccaacaaaac 671108  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 136
Target Start/End: Complemental strand, 28239146 - 28239054
Alignment:
Q  47 aatcaggcatgatgttgttaaca---atcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctgagtatgattt 136  Q
    |||||||  ||||||||||||||   ||||||| |||||| ||||||||||||||| ||||||||||||| |||| |||||||  ||||||||    
T  28239146 aatcagggctgatgttgttaacatgaatcatttcagaatacaaatcataggcttggtttacaagtctatctttgcagagcctgtatatgattt 28239054  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 6326786 - 6326851
Alignment:
Q  69 aatcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctgagtatgat 134  Q
    |||||||| |||||||||||||||||||||| || |||||||||| |||| ||| |||||||||||    
T  6326786 aatcatttcagaatataaatcataggcttggtttgcaagtctatctttgcagagtctgagtatgat 6326851  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 47569226 - 47569148
Alignment:
Q  57 gatgttgttaac---aatcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctgagtatg 132  Q
    ||||||||||||   |||||||| |||||||||||||||||||||| ||||||||||||| |||| ||| |||| ||||    
T  47569226 gatgttgttaacgtgaatcatttcagaatataaatcataggcttggtttacaagtctatctttgcagagtctgaatatg 47569148  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 14508839 - 14508918
Alignment:
Q  64 ttaacaatcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctgagtatgatttcgttata 143  Q
    ||||||||||||| |||||||||||||||||||||| ||||| ||||||| ||||  || |||| |||||| | ||||||    
T  14508839 ttaacaatcatttcagaatataaatcataggcttggtttacacgtctatctttgcatagtctgaatatgatattgttata 14508918  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 28231570 - 28231490
Alignment:
Q  50 caggcatgatgttgttaaca---atcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctga 127  Q
    ||||| ||||||||||||||   ||||||| ||||||||| |||||||||||| | ||||||||||| |||| ||| ||||    
T  28231570 caggcttgatgttgttaacataaatcatttcagaatataattcataggcttggttaacaagtctatctttgcagagtctga 28231490  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 677127 - 677086
Alignment:
Q  201 tctcagcaattgtatggctctttgagtttctccactataaca 242  Q
    ||||| ||||||||||||||||||||||||||| ||||||||    
T  677127 tctcaacaattgtatggctctttgagtttctccgctataaca 677086  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 677265 - 677216
Alignment:
Q  69 aatcattttagaatataaatcataggcttggattacaagtctatccttgc 118  Q
    |||||||| |||||||||||||||||||||   |||||||||||| ||||    
T  677265 aatcatttcagaatataaatcataggcttgatgtacaagtctatctttgc 677216  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 21159183 - 21159228
Alignment:
Q  73 attttagaatataaatcataggcttggattacaagtctatccttgc 118  Q
    |||| |||||||||||||||||||||| ||| ||||||||| ||||    
T  21159183 atttcagaatataaatcataggcttggtttataagtctatctttgc 21159228  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 1717954 - 1717892
Alignment:
Q  56 tgatgttgttaacaatcattttagaatataaatcataggcttggattacaagtctatccttgc 118  Q
    ||||||| || |||||||||| |||||||||||||||||||||| ||||||||||||| ||||    
T  1717954 tgatgttctttacaatcatttcagaatataaatcataggcttggtttacaagtctatctttgc 1717892  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 135
Target Start/End: Original strand, 47924934 - 47925011
Alignment:
Q  58 atgttgttaacaatcattttagaatataaatcataggcttggattacaagtctatccttgccgagcctgagtatgatt 135  Q
    ||||| ||||||||||||| |||||| || |||||||||||  |||| |||||||| |||| |||  |||||||||||    
T  47924934 atgttcttaacaatcatttcagaatagaagtcataggcttgatttactagtctatctttgcagagggtgagtatgatt 47925011  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 259
Target Start/End: Original strand, 47925063 - 47925126
Alignment:
Q  196 acctgtctcagcaattgtatggctctttgagtttctccactataacataagccattaactagaa 259  Q
    |||||||| | ||| |||||||||||||||| ||||||| ||  |||||||||||| |||||||    
T  47925063 acctgtctgaacaagtgtatggctctttgagcttctccaatacgacataagccattgactagaa 47925126  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 24934155 - 24934101
Alignment:
Q  64 ttaacaatcattttagaatataaatcataggcttggattacaagtctatccttgc 118  Q
    ||||||||||||| |||| |||||||| |||| || ||||||||| |||||||||    
T  24934155 ttaacaatcatttcagaacataaatcagaggcatgaattacaagtttatccttgc 24934101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 118
Target Start/End: Complemental strand, 24941688 - 24941634
Alignment:
Q  64 ttaacaatcattttagaatataaatcataggcttggattacaagtctatccttgc 118  Q
    ||||||||||||| |||| |||||||| |||| || ||||||||| |||||||||    
T  24941688 ttaacaatcatttcagaacataaatcagaggcatgaattacaagtttatccttgc 24941634  T

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