View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1096_low_18 (Length: 279)
Name: NF1096_low_18
Description: NF1096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1096_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 43 - 245
Target Start/End: Complemental strand, 5991901 - 5991699
Alignment:
| Q |
43 |
cagacctcgctctcgacattttccgttggacatcccaacaacgttcctacaaacacacttccttaacttaccacaccatcatcacccacctcgccacctc |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5991901 |
cagacctcgctctcgacattttccgttggacatcccaacaacgttcctacaaacacacttccttaacttaccacaccatcatcacccacctcgccacctc |
5991802 |
T |
|
| Q |
143 |
tcgccattaccaacaagctgaaacccttgtagaagaagtacttgccggcgcgtgtgaacccaccctccctcttttcaataccatcctccgtctctgctcc |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||| | |
|
|
| T |
5991801 |
tcgccattaccaacaagctgaaacccttgtagaagaagtacttgccggcgcgtgtgaacccacactccctcttttcaataccatcctccatttctgctgc |
5991702 |
T |
|
| Q |
243 |
tcc |
245 |
Q |
| |
|
||| |
|
|
| T |
5991701 |
tcc |
5991699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University