View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1096_low_19 (Length: 252)
Name: NF1096_low_19
Description: NF1096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1096_low_19 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (4 HSPs) |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 36374719 - 36374939
Alignment:
| Q |
29 |
aacaagctgatgaagatgataataatgatacgttcacaactgatgctattgatcttcttggtgaaccaatatccaaagaaaatgatagtgtttgggaatt |
128 |
Q |
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|||||| ||||||||||| |||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36374719 |
aacaagttgatgaagatgttaataatgatacgttctcaactgatgctactgatctt---ggtgaaccaatatccaaagaaaatgatagtgtttgggaatt |
36374815 |
T |
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| Q |
129 |
gattcctgaactcaaagaaaacatgcatgcacaccagaaaaaagcttttgaatttctctggaagaacattgcagggtctatggagcaatcactcatggaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36374816 |
gattcctgaactcaaagaaaacatgcatgcacaccagaaaaaagcttttgaatttctctggaagaacattgcagggtctatggagcaatcactcatggaa |
36374915 |
T |
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| Q |
229 |
gaaaaatctaacacaagtggtggc |
252 |
Q |
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| T |
36374916 |
gaaaaatctaacacaagtggtggc |
36374939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 117 - 252
Target Start/End: Complemental strand, 32250675 - 32250540
Alignment:
| Q |
117 |
tgtttgggaattgattcctgaactcaaagaaaacatgcatgcacaccagaaaaaagcttttgaatttctctggaagaacattgcagggtctatggagcaa |
216 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||| | |||||||| || |||||||| | | |
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| T |
32250675 |
tgtttgggaattgattcctgaacttgaagaaaagatgcatgaacaccagaaaaaagcttttgaatttctttggcaaaacattgctggctctatggaacca |
32250576 |
T |
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| Q |
217 |
tcactcatggaagaaaaatctaacacaagtggtggc |
252 |
Q |
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| T |
32250575 |
tcactcatggaagaaaaatccaactcaagtggtggc |
32250540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 38208959 - 38208809
Alignment:
| Q |
90 |
tgaaccaatatccaaagaaaatgatagtgtttgggaattgattcctgaactcaaagaaaacatgcatgcacaccagaaaaaagcttttgaatttctctgg |
189 |
Q |
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| T |
38208959 |
tgaactaataactaaacaaaatgacaatgtttcgaaattgattcaagaaatcaaaggtaaaacgcatgcacactaggaaaaagcttttgagtttctttgg |
38208860 |
T |
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| Q |
190 |
aagaacattgcagggtctatggagcaatcactcatggaagaaaaatctaac |
240 |
Q |
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| T |
38208859 |
caaaacattactagctcaatggaacaatcactcatgaaagaaaaatctaac |
38208809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 7412115 - 7412056
Alignment:
| Q |
90 |
tgaaccaatatccaaagaaaatgatagtgtttgggaattgattcctgaactcaaagaaaa |
149 |
Q |
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| T |
7412115 |
tgaaccaatatctaaagaaaaaaatattgtttaggaattgattccagaactcgaagaaaa |
7412056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 184
Target Start/End: Original strand, 38208620 - 38208714
Alignment:
| Q |
90 |
tgaaccaatatccaaagaaaatgatagtgtttgggaattgattcctgaactcaaagaaaacatgcatgcacaccagaaaaaagcttttgaatttc |
184 |
Q |
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| T |
38208620 |
tgaactaatatctaaagaaaatgacaaagtttggaaattgattcaagaaatcaaaggtaagatgcatgcatgccagaaaaaggtttttgaatttc |
38208714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 36 - 232
Target Start/End: Complemental strand, 8845281 - 8845088
Alignment:
| Q |
36 |
tgatgaagatgataataatgatacgttcacaactgatgctattgatcttcttggtgaaccaatatccaaagaaaatgatagtgtttgggaattgattcct |
135 |
Q |
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|||||||||||||||||| |||| |||| ||||| |||||| ||||| | | |||||||||||| |||||| || | ||||||||||| |||||| |
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| T |
8845281 |
tgatgaagatgataataaagatatgttctcaactaatgctactgatcct---gatgaaccaatatctgcagaaaaagacactgtttgggaatcgattcca |
8845185 |
T |
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| Q |
136 |
gaactcaaagaaaacatgcatgcacaccagaaaaaagcttttgaatttctctggaagaacattgcagggtctatggagcaatcactcatggaagaaa |
232 |
Q |
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|||||||||||||| |||||||| ||||||||||| |||||| ||||||| ||| | |||||||| || || ||||| | ||| |||||| |||||| |
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| T |
8845184 |
gaactcaaagaaaagatgcatgcgcaccagaaaaaggcttttaaatttctttggcaaaacattgctggctccatggaaccatccctcatgcaagaaa |
8845088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 185
Target Start/End: Complemental strand, 8809387 - 8809243
Alignment:
| Q |
41 |
aagatgataataatgatacgttcacaactgatgctattgatcttcttggtgaaccaatatccaaagaaaatgatagtgtttgggaattgattcctgaact |
140 |
Q |
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|||||||||||||||||| |||| |||| || | | ||||| || || ||||||| |||| |||| | | || | ||||||||||||||||| |||| | |
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| T |
8809387 |
aagatgataataatgatatgttcttaactcattccaatgatcctcatgatgaaccattatcaaaagtataagacaatgtttgggaattgattcttgaatt |
8809288 |
T |
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| Q |
141 |
caaagaaaacatgcatgcacaccagaaaaaagcttttgaatttct |
185 |
Q |
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| T |
8809287 |
caaagaaaagatgcatgcgcaccagaaaaaagcttttgaatttct |
8809243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 251
Target Start/End: Original strand, 8822588 - 8822800
Alignment:
| Q |
36 |
tgatgaagatgataataatgatacgttcacaactgatgctattgatcttcttggtgaaccaatatccaaagaaaatgatagtgtttgggaattgattcct |
135 |
Q |
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|||||||||| ||||||| | | |||||||||| ||| |||||||| | | ||||||| |||| |||||| | || | ||||||| ||||||||||| |
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| T |
8822588 |
tgatgaagattataataagcacatgttcacaactcatgttattgatcct---gatgaaccattatctaaagaagaagacaatgtttggaaattgattcct |
8822684 |
T |
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| Q |
136 |
gaactcaaagaaaacatgcatgcacaccagaaaaaagcttttgaatttctctggaagaacattgcagggtctatggagcaatcactcatggaagaaaaat |
235 |
Q |
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||| |||||||||| |||||||| || ||||||| || ||||||||||| ||| | ||||| || || ||||| | ||| |||||| |||||| || |
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| T |
8822685 |
gaattcaaagaaaagatgcatgcgcatcagaaaagtgcctttgaatttctttggcaaaacatcattggttccatggaaccatccctcatgcaagaaagat |
8822784 |
T |
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| Q |
236 |
ctaacacaagtggtgg |
251 |
Q |
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| T |
8822785 |
ccaaaacaagtggtgg |
8822800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 164902 - 165005
Alignment:
| Q |
90 |
tgaaccaatatccaaagaaaatgatagtgtttgggaattgattcctgaactcaaagaaaacatgcatgcacaccagaaaaaagcttttgaatttctctgg |
189 |
Q |
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|||||||||||| ||||||| ||| | |||||||||||||||| ||||||| |||||||| ||||||| ||||| | |||| |||||||||||| ||| |
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| T |
164902 |
tgaaccaatatctaaagaaattgacaatgtttgggaattgatt-ctgaactaaaagaaaatatgcatgtgcaccaaattaaaggttttgaatttctttgg |
165000 |
T |
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| Q |
190 |
aagaa |
194 |
Q |
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|||| |
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| T |
165001 |
cagaa |
165005 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 35960157 - 35960081
Alignment:
| Q |
130 |
attcctgaactcaaagaaaacatgcatgcacaccagaaaaaagcttttgaatttctctggaagaacattgcagggtc |
206 |
Q |
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||||||||||||| |||||| |||||| ||||| || ||||||||||| ||||| ||| |||||||||||||| |
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| T |
35960157 |
attcctgaactcagagaaaaattgcatgtgcaccaaaagaaagcttttgagtttctttggcgaaacattgcagggtc |
35960081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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