View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1096_low_20 (Length: 251)
Name: NF1096_low_20
Description: NF1096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1096_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2289674 - 2289895
Alignment:
| Q |
1 |
ttaatgattctgttgctcttaggactctatcctcctaaagcttctaatagtaagttctactttctttctttttctacataaatctcttagggtttaaggt |
100 |
Q |
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| T |
2289674 |
ttaatgattctgttgctcttaggactctatcctcctaaagcttctaatagtaagttctactttctttctttttctacataaatctcttagggtttaaggt |
2289773 |
T |
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| Q |
101 |
attgtttaaacatttcaaagtagaccgttatggactttcttaaagcacttcgcccttagccatggggctgtggaccgctatggacctaaagaaagggcgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2289774 |
attgtttaaacatttcaaagtagaccgttatggactttcttaaagcacttcgcccttagccatggggctgtggaccgctatggacctaaagaaagggcgc |
2289873 |
T |
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| Q |
201 |
cgccatgaaggaaggagccgtc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
2289874 |
cgccatgaaggaaggagccgtc |
2289895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 2285895 - 2285981
Alignment:
| Q |
5 |
tgattctgttgctcttaggactct--atcctcctaaagcttctaatagtaagt-tctactttctttctttttctacataaatctctt |
88 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
2285895 |
tgattctgttgctcttaggactctctatcctcctaaagcttctaatagtaagtgaaaactttctttctttttctatataaatctctt |
2285981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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