View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1096_low_5 (Length: 403)
Name: NF1096_low_5
Description: NF1096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1096_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 50 - 388
Target Start/End: Complemental strand, 7179355 - 7179017
Alignment:
| Q |
50 |
taagtgtaatttcagaaatagttgaagctataaatgcaacctcaagcatgatgaatcaaacagcaccaaaggaactaatgttgtatatgaatgacctttt |
149 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7179355 |
taagtgtaatttcagaaatagttgaagctataaatgaaacctcaagcatgatgaatcaaacagcaccaaaggaactaatgttgtatatgaatgacctttt |
7179256 |
T |
|
| Q |
150 |
caccaatgacttcaacaacatttttgcttctttgccatcttttcacaaaaaactaaggcaagacatgggatacaataatcatgataatcacaatggttct |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7179255 |
caccaatgacttcaacaacatttttgcttctttgccatcttttcacaaaaaactaaggcaagacatgggatacaataatcatgataatcacaatggttct |
7179156 |
T |
|
| Q |
250 |
aattgttttgtttctgctgtaccgggcactttttatggtagactcttcccaactaagtcccttcattttgtgcactcttcttcaagcctccattggcttt |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7179155 |
aattgttttgtttctgctgtaccgggcactttttatggtagactcttcccaactaagtcccttcattttgtgcactcttcttcaagcctccattggcttt |
7179056 |
T |
|
| Q |
350 |
ctcaggttagtttgttctccaaacacttaattagtatat |
388 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
7179055 |
ctcaggttagtttgttctccaaacacttaattagtatat |
7179017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 50 - 357
Target Start/End: Complemental strand, 7192524 - 7192217
Alignment:
| Q |
50 |
taagtgtaatttcagaaatagttgaagctataaatgcaacctcaagcatgatgaatcaaacagcaccaaaggaactaatgttgtatatgaatgacctttt |
149 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| |||||||| ||||||||||||||||| |
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| T |
7192524 |
taagggtaatttcagaaatagttgaagctataaatgcaacctcaagcatgttgaatcgaccagcaccaaaggagctaatgttatatatgaatgacctttt |
7192425 |
T |
|
| Q |
150 |
caccaatgacttcaacaacatttttgcttctttgccatcttttcacaaaaaactaaggcaagacatgggatacaataatcatgataatcacaatggttct |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||| | | |||| | ||||||||| || |||||||||||||| |
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| T |
7192424 |
caccaatgacttcaacaacatttttgcttctttgccatctttccacaaaaaattaagccaacaaaagggaaataataatcatcatgatcacaatggttct |
7192325 |
T |
|
| Q |
250 |
aattgttttgtttctgctgtaccgggcactttttatggtagactcttcccaactaagtcccttcattttgtgcactcttcttcaagcctccattggcttt |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7192324 |
aattgttttgtttctgctgtaccgggcactttttatggtagactcttcccaactaagtcccttcattttgtgcactcttcttcaagcctccattggcttt |
7192225 |
T |
|
| Q |
350 |
ctcaggtt |
357 |
Q |
| |
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|| ||||| |
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|
| T |
7192224 |
ctaaggtt |
7192217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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