View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1096_low_8 (Length: 356)
Name: NF1096_low_8
Description: NF1096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1096_low_8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 36375370 - 36375015
Alignment:
| Q |
1 |
tcatcaagtatcaagagtccgggactttccctcaatgctttagccgtgcgctttctgtgtgannnnnnnnnatcttctgttctcattaaggctaaaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36375370 |
tcatcaagtatcaagagtccgggactttccctcaatgctttagccgtgcgctttctgtgtgaattttttttatcttctgttctcattaaggctaaaaatg |
36375271 |
T |
|
| Q |
101 |
aggaatagcccatgacaagaacactagggtgtgaattccagcttttgatctttcgtagacaatcaaaatcatgcttgacaccattagaatttgaaactcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36375270 |
aggaatagcccatgacaagaacactagggtgtgaattccagcttttgatcttttgtagacaatcaaaatcatgcttgacaccattagaatttgaaactcc |
36375171 |
T |
|
| Q |
201 |
aggtagaaccactgatttaggtgtcatcgaacgtctctgggttcgactgctgtggataagatacaccggcatgggaatattccatttttcgaactctttt |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36375170 |
aggtagaaccactgattttggtgtcatcgaatgtctctgggtttgactgctgtggataagatacaccggcatgggaatattccatttttcgaactctttt |
36375071 |
T |
|
| Q |
301 |
tgccatgtgtagagtgtggtctttggagctaggaccaatggtcttttctctggaaa |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36375070 |
tgccatgtgtagagtgtggtctttggagctaggaccaatggtcttttctctggaaa |
36375015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 32250100 - 32250464
Alignment:
| Q |
1 |
tcatcaagtatcaagagtccgggactttccctcaatgctttagccgtgcgctttctgtgtgannnnnnnnnatcttctgttctcattaaggctaaaaatg |
100 |
Q |
| |
|
|||||||||||||||| ||| || ||||| ||||||||||||||| || ||||||||| ||||| || ||||||||| |||||||| |
|
|
| T |
32250100 |
tcatcaagtatcaagattccagggctttctctcaatgctttagccatgtattttctgtgttcgaattttgtatcttttgatctcattaattgtaaaaatg |
32250199 |
T |
|
| Q |
101 |
aggaatagcccatgacaagaacactagggtgtgaattccagcttttg-atctttcgtagacaatcaaaatcatgcttgacaccattagaat---ttgaaa |
196 |
Q |
| |
|
| | |||||||||||||||||||||||||||||| | ||| |||||| ||||| | |||||||| ||| |||| |||||| || ||||| ||| || |
|
|
| T |
32250200 |
aagtatagcccatgacaagaacactagggtgtgagtgcca-cttttgtatcttgctgagacaatccaaaacatgtttgacatcactagaaggtcttggaa |
32250298 |
T |
|
| Q |
197 |
ctccaggtagaaccactgatttaggtgtcatcgaacgtct--ctgg----gttcgactgctgtggataagatacaccggcatgggaatattccatttttc |
290 |
Q |
| |
|
|||||| |||| || |||||| |||||| |||||| | |||| ||||||| || ||||||||||| ||||||| | ||| |||||||||| |
|
|
| T |
32250299 |
atccaggaagaatcattgattttggtgtcgtcgaacttgaacctggagaggttcgacggccatggataagataaaccggcacagaaatcttccatttttt |
32250398 |
T |
|
| Q |
291 |
gaactctttttgccatgtgtagagtgtggtctttggagctaggaccaatggtcttttctctggaaa |
356 |
Q |
| |
|
|||||||||| |||| |||||||||||||| |||||||||||||| | |||| |||| ||||||| |
|
|
| T |
32250399 |
gaactcttttcgccacgtgtagagtgtggtttttggagctaggactagaggtcgtttccctggaaa |
32250464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 356
Target Start/End: Original strand, 8844714 - 8844992
Alignment:
| Q |
81 |
tctcattaaggctaaaaatgaggaatagcccatgacaagaacactagggtgtgaattccagcttttgatctttcgtagacaatcaaaatcatgcttgaca |
180 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||| |||||||||| ||| |||| || |||| |||||||| ||| |||| || ||| |
|
|
| T |
8844714 |
tctcattaaggctaaaaatgaagtgtagcccatgacaagaacacttgggtgtgaatgccacttttttatttttccaagacaatccaaaacatgttttaca |
8844813 |
T |
|
| Q |
181 |
ccattagaat---ttgaaactccaggtagaaccactgatttaggtgtcatcgaacgtctctgggttcgactgctgtggataagatacaccggcatgggaa |
277 |
Q |
| |
|
|| |||| ||| |||||| || |||||| | ||| || | | | ||| |||||||||| ||| || |||||||||||||| |||| |||| |
|
|
| T |
8844814 |
tcaccagaaggtcttggaactccgggaagaaccgtaggttttggagccgttgaatctctctgggtttgacggccttggataagatacacgggcacaggaa |
8844913 |
T |
|
| Q |
278 |
tattccatttttcgaactctttttgccatgtgtagagtgtggtctttggagctaggaccaatggtcttttctctggaaa |
356 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||| ||||| || ||||| |||||||||||| ||||||| |
|
|
| T |
8844914 |
ccttccattttttgaactctttgcaccatgtgtagagtgtggattttggtgcaaggactaatggtcttttccctggaaa |
8844992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University