View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1096_low_9 (Length: 350)
Name: NF1096_low_9
Description: NF1096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1096_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 47 - 321
Target Start/End: Complemental strand, 24695503 - 24695228
Alignment:
| Q |
47 |
acaagaaactatttcacaacaaataaaggcacnnnnnnnnn-tgcacgaggagatgaaagtttattcttggaactggttgcgtattaaattaaagatcaa |
145 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24695503 |
acaagaaactatttcccaacaaataaaggcacaaaaaaaaaatgcacgaggagatgaaagtttattcttggaactggttgcgtattaaattaaatatcaa |
24695404 |
T |
|
| Q |
146 |
taattacaacattgtacaatggtgtttgaatccgcgggttttccttgacgatattacggtttgaaaattcagattgttctggtgattttaaagtgcacaa |
245 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24695403 |
taattacaacattgtgcagtggtgtttgaatccgcgggttttccttgacgatattacggtttgaaaattcagattgttctggtgattttaaagtgcacag |
24695304 |
T |
|
| Q |
246 |
gtgacttaattcataccatctaattcagctcagattttatttgtctcggttgtgtcttatcatagcagtgtgttag |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24695303 |
gtgacttaattcataccatctaattcagctcagattttatttgtctcggttgtgtcttatcatagcagtgtgttag |
24695228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 93 - 321
Target Start/End: Complemental strand, 24707990 - 24707761
Alignment:
| Q |
93 |
gaggagatgaaagtttattcttggaactggttgcgtattaaattaaagatcaataattacaacattgtacaatggtgtttgaatccgcgggttttccttg |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||| ||| || | ||||||| ||||| || | |||||||| |||| | || ||||| |
|
|
| T |
24707990 |
gaggagatgaaagtttattcttggaactggttgtggattaaatcaaatattcacgattacaatattgtgcagtcgtgtttgagtccgtttgcttgccttg |
24707891 |
T |
|
| Q |
193 |
acgatattacggtttgaaaattcagattgttctggtgattttaaagtgcacaagtgacttaattcataccatctaattcagctcagattttatttgtctc |
292 |
Q |
| |
|
|| ||||||| |||||||||| |||| |||||||||||||| ||||||| || |||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
24707890 |
acaatattacattttgaaaatttagatggttctggtgattttgaagtgcataattgacttaattcataccctctaattcaactcagattttatttgtctc |
24707791 |
T |
|
| Q |
293 |
ggttgtgtc-ttatcatagcagtgtgttag |
321 |
Q |
| |
|
||||||||| ||||| |||||||||||||| |
|
|
| T |
24707790 |
ggttgtgtctttatcgtagcagtgtgttag |
24707761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University