View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10970_high_13 (Length: 370)
Name: NF10970_high_13
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10970_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 51930095 - 51930342
Alignment:
| Q |
23 |
caatagtagttatcgatcctcacatcatggaaaagctccattttgtgctcaaccttcttcgccaccggaggaggaagcggagattgagactgcggcgaca |
122 |
Q |
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| T |
51930095 |
caatagtagttatcgatcctcacatcattgaaaagctccattttgtgctcaaccttcttcgccaccggaggaggaagcggagattgagaatgcggcgaca |
51930194 |
T |
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| Q |
123 |
gaga------ttgtggaggtgaagtcgtcatcggacggcggtggtgatgagagaacgcggcggtggtggaaaaaggaagagaaagagtgaggacggaaac |
216 |
Q |
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| T |
51930195 |
gagattgagattgtggaggtgaagtcgtcatcggacggcggtggtgatgagagaacgcggcggtggtggaaaaaggaagagaaagagtgaggacggaaac |
51930294 |
T |
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| Q |
217 |
agttagaggaatgcagcagaataatcgactaatgtttaagcgaacaag |
264 |
Q |
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| T |
51930295 |
agttagaggaatgcagcagaataatcgactaatgtttaagcgaacaag |
51930342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 350
Target Start/End: Original strand, 51930393 - 51930427
Alignment:
| Q |
316 |
gaaaacagtctactccactccactcactcactcac |
350 |
Q |
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| T |
51930393 |
gaaaacagtctactccactccactcactcactcac |
51930427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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