View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10970_high_14 (Length: 368)

Name: NF10970_high_14
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10970_high_14
NF10970_high_14
[»] chr3 (1 HSPs)
chr3 (181-358)||(37602064-37602238)
[»] chr1 (1 HSPs)
chr1 (181-358)||(46558753-46558927)
[»] chr5 (1 HSPs)
chr5 (177-280)||(22778625-22778728)
[»] chr8 (1 HSPs)
chr8 (31-125)||(17931981-17932075)
[»] chr6 (1 HSPs)
chr6 (38-125)||(23602332-23602419)
[»] scaffold0838 (1 HSPs)
scaffold0838 (31-119)||(1818-1906)
[»] scaffold0832 (1 HSPs)
scaffold0832 (31-119)||(1849-1937)
[»] chr4 (2 HSPs)
chr4 (31-91)||(11012773-11012833)
chr4 (22-113)||(12189863-12189954)
[»] chr7 (1 HSPs)
chr7 (31-119)||(5760706-5760794)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 181 - 358
Target Start/End: Original strand, 37602064 - 37602238
Alignment:
Q  181 ttattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttaca 280  Q
    ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||     
T  37602064 ttattcaaatagatgtaaatgaataggcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatg-catcaaatccactactttacg 37602162  T
Q  281 atctaaatgtaacgtgtccaattggagctttttctacaaatctgcaaattgtacttcaaatccaatgcatggcctatg 358  Q
     || ||||||||||||||  ||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||    
T  37602163 gtccaaatgtaacgtgtcatattggagctttt--tacaaatctgcaaattgtacttcaaatctaatgcatggcctatg 37602238  T

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Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 181 - 358
Target Start/End: Complemental strand, 46558927 - 46558753
Alignment:
Q  181 ttattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttaca 280  Q
    ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||     
T  46558927 ttattcaaatagatgtaaatgaataggcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatg-catcaaatccactactttacg 46558829  T
Q  281 atctaaatgtaacgtgtccaattggagctttttctacaaatctgcaaattgtacttcaaatccaatgcatggcctatg 358  Q
     || ||||||||||||||  ||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||    
T  46558828 gtccaaatgtaacgtgtcatattggagctttt--tacaaatctgcaaattgtacttcaaatctaatgcatggcctatg 46558753  T

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Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 22778625 - 22778728
Alignment:
Q  177 cacattattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaa-cccactact 275  Q
    ||||||||| |||||||||||||||| ||||||||| |||||  ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  22778625 cacattattcaaatagatgtaaatgaataggcatcaactacttacatcaaaatatggctgcaagttctacacgtgaataatg-catcaaaccccactact 22778723  T
Q  276 ttaca 280  Q
    |||||    
T  22778724 ttaca 22778728  T

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Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 17932075 - 17931981
Alignment:
Q  31 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtctccactt 125  Q
    ||||| |||||||| |||||| |||||||||||| || |||||| ||||||||||| |||| ||| | ||| |||||||||||||| ||||||||    
T  17932075 atctcttgactcttcagagaggttatcagattcttcaggctaagattgttcaagtcctttgcttcgtgaatggttgtaaccttaggcctccactt 17931981  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 23602419 - 23602332
Alignment:
Q  38 gactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtctccactt 125  Q
    ||||||| |||||||||||||| ||||||| ||||||  |||| |||| ||||| |||||| |||| ||||||||| || ||||||||    
T  23602419 gactcttcagagagcttatcaggttctccaagctaagtctgtttaagtattttgcttcctatatagatgtaacctttgggctccactt 23602332  T

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Target: scaffold0838 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 1818 - 1906
Alignment:
Q  31 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtct 119  Q
    |||||||| || || ||||| ||||||||||| |||| ||| |||||||||| ||| |||| ||||| ||| ||||||||||| |||||    
T  1818 atctcatgtcttttgagagaacttatcagattttccaagcttagcttgttcatgtcctttgcttcctgaatggttgtaacctttggtct 1906  T

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Target: scaffold0832 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 1849 - 1937
Alignment:
Q  31 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtct 119  Q
    |||||||| || || ||||| ||||||||||| |||| ||| |||||||||| ||| |||| ||||| ||| ||||||||||| |||||    
T  1849 atctcatgtcttttgagagaacttatcagattttccaagcttagcttgttcatgtcctttgcttcctgaatggttgtaacctttggtct 1937  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 11012833 - 11012773
Alignment:
Q  31 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttg 91  Q
    ||||||||||||| |||||||||||||||| ||||||  | |||||||||||| |||||||    
T  11012833 atctcatgactctctagagagcttatcagagtctccaatccaagcttgttcaattcttttg 11012773  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 12189863 - 12189954
Alignment:
Q  22 ataagctttatctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaacctt 113  Q
    ||||||| |||| ||||| | || ||||| ||||||||||||| || ||| ||||||||||| || |||| ||||| ||| |||||||||||    
T  12189863 ataagctatatcacatgaattttgagagaacttatcagattcttcaggcttagcttgttcaaatcctttgcttcctgaatggttgtaacctt 12189954  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 119
Target Start/End: Original strand, 5760706 - 5760794
Alignment:
Q  31 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtct 119  Q
    |||||||||||||| |||||||| || ||| | |||| ||| | ||| ||||| || |||| ||||| |||||||||| |||| |||||    
T  5760706 atctcatgactcttgagagagctaatgagactttccaagcttaccttattcaattcctttgcttcctgaatagttgtagcctttggtct 5760794  T

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