View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10970_high_22 (Length: 286)

Name: NF10970_high_22
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10970_high_22
NF10970_high_22
[»] chr8 (1 HSPs)
chr8 (11-286)||(33195348-33195637)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 33195637 - 33195348
Alignment:
Q  11 cagagacaagacagcccaggtaatgacaacaggagcatttgttcgaccactcgaaccctccaaaatttaagccttgcaatcccaaatatgt--------- 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||             
T  33195637 cagagacaagacagcccaggtaatgacaacaggagcatttgttcgaccactcgaaccctccaaaaattaagccttgcaatcccaaatatgtaagggaaaa 33195538  T
Q  102 -----tgtggacaccgtataataaatctatacatctttgcgagagaaagataaagaaagagtaacgtggtagatatgataatcggtgatgcgataaaaag 196  Q
         ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  33195537 tatgttgtagacaccgtataataagtctatacatctttgcgagagaaagataaaaaaagagtaacgtggtagatatgataatcggtgatgcgatgaaaag 33195438  T
Q  197 agagaaaattgtgtgttaaataagcgtttgaaaatatgatatgtccaaatatcattgttgatatattaaaatctgaatttgatttcctac 286  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33195437 agagaaaattgtgtgttaaataagtgtttgaaaatatgatatgtccaaatatcattgttgatatattaaaatttgaatttgatttcctac 33195348  T

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