View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10970_high_24 (Length: 273)
Name: NF10970_high_24
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10970_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 33522063 - 33521827
Alignment:
| Q |
1 |
gtcacacttgaacgtccttctttcgtgctcgtgct------tatgggccgcatttgtctcttcccacacgcgtgcctccaaattcacccaccgtcctctc |
94 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33522063 |
gtcacacttgaacgtccttctttcgtgctcgtgctcgtgcttctgggccgcatttgtctcttcccacacgcgtgcctccaaattcacccaccgtcctctc |
33521964 |
T |
|
| Q |
95 |
aattctcatccacttccaaacatcacaaaatctaccacttttctaagcaaattttagttttagggattctaagcaaatcttatctgagtctcagtcaact |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33521963 |
aattctcatccacttccaaacatcacaaaatctaccacttttctaagcaaattttagttttagggattctaagcaaatcttatctgagtctcagtcaact |
33521864 |
T |
|
| Q |
195 |
gaatccttaaattcttactaataagtattagaaatcc |
231 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33521863 |
gaatccttaaattctaactaataagtattagaaatcc |
33521827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University