View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10970_high_26 (Length: 265)

Name: NF10970_high_26
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10970_high_26
NF10970_high_26
[»] chr4 (13 HSPs)
chr4 (2-253)||(3956755-3957007)
chr4 (76-234)||(3985574-3985732)
chr4 (80-253)||(4023754-4023927)
chr4 (76-229)||(3816187-3816340)
chr4 (76-180)||(3800291-3800395)
chr4 (76-244)||(4217199-4217367)
chr4 (76-229)||(3808613-3808766)
chr4 (76-253)||(3921300-3921477)
chr4 (80-253)||(4000838-4001011)
chr4 (79-181)||(4008647-4008749)
chr4 (127-176)||(3934570-3934619)
chr4 (1-67)||(3808799-3808865)
chr4 (1-65)||(3985768-3985832)
[»] chr5 (2 HSPs)
chr5 (77-253)||(13396524-13396704)
chr5 (1-63)||(13396744-13396806)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 253
Target Start/End: Original strand, 3956755 - 3957007
Alignment:
Q  2 taattgaatacgtgtcttctagattaaatttaccttaaatcaaagaattataaattaattacgtaannnnnnnn-gtagcaggatctggttaatttaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         |||||||||||||||||||||||||    
T  3956755 taattgaatacgtgtcttctagattaaatttaccttaaatcaaagaattataaattaattatgtaatttttttttgtagcaggatctggttaatttaaaa 3956854  T
Q  101 gaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattgaatatccaaggttgttatgggttga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3956855 gaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattgaatatccaaggttgttatgggttga 3956954  T
Q  201 caagcatccatccatctattttctctcttgacaaacttgtgaaattggaccta 253  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  3956955 caagcatccatccgtctattttctctcttgacaaacttttgaaattggaccta 3957007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 76 - 234
Target Start/End: Complemental strand, 3985732 - 3985574
Alignment:
Q  76 gtagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattg 175  Q
    ||||||||||||  |||||||||||||||||||||||||   ||||| |  |||||||| | ||||||||||||||||||||| ||||||||| ||||||    
T  3985732 gtagcaggatctaattaatttaaaagaagttacactctctttttcagaagacctgaaggagttaccagacttttcaaaagccataaatcttaaggtattg 3985633  T
Q  176 aatatccaaggttgttatgggttgacaagcatccatccatctattttctctcttgacaa 234  Q
    ||||||||| ||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  3985632 aatatccaacgttgttatatgttgacaagcgtccatccatctattttctctcttgacaa 3985574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 80 - 253
Target Start/End: Complemental strand, 4023927 - 4023754
Alignment:
Q  80 caggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattgaata 179  Q
    |||||||| |||||||||||||| |||| ||||||  ||||   ||||||||||| | |||| |||||||||||||| || |||||||| ||||||||||    
T  4023927 caggatctagttaatttaaaagaggttagactctcctattcgaaattcctgaaggagttacctgacttttcaaaagctactaatcttaaagtattgaata 4023828  T
Q  180 tccaaggttgttatgggttgacaagcatccatccatctattttctctcttgacaaacttgtgaaattggaccta 253  Q
    |   |  |||| ||   |||| |||| |||||||||||||||||||||||||||| |||||| | |||||||||    
T  4023827 tggcacattgtcataatttgaaaagcgtccatccatctattttctctcttgacaagcttgtgcatttggaccta 4023754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 229
Target Start/End: Complemental strand, 3816340 - 3816187
Alignment:
Q  76 gtagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattg 175  Q
    ||||||||||||  |||||||||||||||||| ||||||  |||||   ||  | |||| | ||||||||||||||||||||| ||||||||| |||||     
T  3816340 gtagcaggatctaattaatttaaaagaagttagactctcttattcaatgttattaaaggagttaccagacttttcaaaagccataaatcttaaggtatta 3816241  T
Q  176 aatatccaaggttgttatgggttgacaagcatccatccatctattttctctctt 229  Q
    ||||||  | ||||||||  | ||| |||| |||||||||||||||| ||||||    
T  3816240 aatatctcaagttgttatcagctgaaaagcgtccatccatctattttatctctt 3816187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 180
Target Start/End: Complemental strand, 3800395 - 3800291
Alignment:
Q  76 gtagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattg 175  Q
    ||||| |||||| ||||||||||||||||||||||| ||||||||||||||| |||||| | ||||  |||||||||||||   |||||| |||||||||    
T  3800395 gtagccggatctagttaatttaaaagaagttacactatcacattcaggattcttgaaggagttacctaacttttcaaaagctgaaaatctgaatgtattg 3800296  T
Q  176 aatat 180  Q
     ||||    
T  3800295 catat 3800291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 244
Target Start/End: Complemental strand, 4217367 - 4217199
Alignment:
Q  76 gtagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattg 175  Q
    ||||| |||||| ||||||||||||||||||| ||| ||||||||||||||| |||||| | ||||  |||||||||||||   |||||| |||||||||    
T  4217367 gtagccggatctagttaatttaaaagaagttaaactatcacattcaggattcttgaaggagttacctaacttttcaaaagctgaaaatctgaatgtattg 4217268  T
Q  176 aatatccaaggttgttatgggttgacaagcatccatccatctattttctctcttgacaaacttgtgaaa 244  Q
     ||||  ||| ||||  |  ||||  |||  |||||||||||||||||| || || ||| |||||||||    
T  4217267 catattgaagattgtcctcagttggaaagtgtccatccatctattttctgtcctggcaagcttgtgaaa 4217199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 229
Target Start/End: Complemental strand, 3808766 - 3808613
Alignment:
Q  76 gtagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattg 175  Q
    ||||||||||||  |||||||||||||||||| | || |  |||||  |||| | |||| | |||||||||||||||||||||||||||| || | |||     
T  3808766 gtagcaggatctaattaatttaaaagaagttagattcactaattcaaaattcttaaaggagttaccagacttttcaaaagccacaaatctgaaggcattt 3808667  T
Q  176 aatatccaaggttgttatgggttgacaagcatccatccatctattttctctctt 229  Q
     ||||| ||   ||| | | ||||| |||| |||||||||||||||||||||||    
T  3808666 catatcaaaatctgtaaagagttgataagcgtccatccatctattttctctctt 3808613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 253
Target Start/End: Original strand, 3921300 - 3921477
Alignment:
Q  76 gtagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattg 175  Q
    ||||||| |||| ||||||||||| ||||||||| ||     | || | |||||||||| | ||||||||||||||||||||||||||||||| ||||||    
T  3921300 gtagcagaatctagttaatttaaaggaagttacaatcatttgtgcaagcttcctgaaggagttaccagacttttcaaaagccacaaatcttaaagtattg 3921399  T
Q  176 aatatccaaggttgttatgggttgacaagcatccatccatctattttctctcttgacaaacttgtgaaattggaccta 253  Q
    | | ||   | |||| ||   |||  |||| ||||||||||||||||  ||||||| || |||||| | |||||||||    
T  3921400 agtgtcactgcttgtgataatttggaaagcgtccatccatctatttttactcttgagaagcttgtgcatttggaccta 3921477  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 253
Target Start/End: Complemental strand, 4001011 - 4000838
Alignment:
Q  80 caggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattgaata 179  Q
    |||||||| |||||||||||||| |||| |||| |   |||| | ||||| || |   ||||||||||||||||||| ||||||||||| ||||||||||    
T  4001011 caggatctagttaatttaaaagaggttagactcaccagttcaaggttccttaaagaattaccagacttttcaaaagctacaaatcttaaggtattgaata 4000912  T
Q  180 tccaaggttg-ttatgggttgacaagcatccatccatctattttctctcttgacaaacttgtgaaattggaccta 253  Q
    ||  || |||  |||   |||  |||| |||| ||||||||||||||||| || || |||||| |||||||||||    
T  4000911 tcacagattgcctat-cattggaaagcgtccacccatctattttctctctagaaaagcttgtgcaattggaccta 4000838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 4008749 - 4008647
Alignment:
Q  79 gcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattgaat 178  Q
    ||||||||| ||||||||| ||||| ||| |||||   ||||| ||| | |||||| | | |||||| |||||||||| ||||||||||| |||||||||    
T  4008749 gcaggatctagttaatttacaagaatttagactctttgattcacgatccttgaaggagttgccagacctttcaaaagctacaaatcttaaagtattgaat 4008650  T
Q  179 atc 181  Q
    |||    
T  4008649 atc 4008647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 3934570 - 3934619
Alignment:
Q  127 cctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattga 176  Q
    |||||||| | | ||||||||||||||||||||||||||||| |||||||    
T  3934570 cctgaaggagttgccagacttttcaaaagccacaaatcttaaagtattga 3934619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 3808865 - 3808799
Alignment:
Q  1 gtaattgaatacgtgtcttctagattaaatttaccttaaatcaaagaattataaattaattacgtaa 67  Q
    ||||||| |||||||||||| | |||||||||| ||||| |||  |||||||||| |||||| ||||    
T  3808865 gtaattggatacgtgtcttccaaattaaatttatcttaattcagggaattataaaataattatgtaa 3808799  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3985832 - 3985768
Alignment:
Q  1 gtaattgaatacgtgtcttctagattaaatttaccttaaatcaaagaattataaattaattacgt 65  Q
    ||||||||||| ||||||   |||||||||||| |  || |||| ||||||||||||||||||||    
T  3985832 gtaattgaatatgtgtctatcagattaaatttatcaaaattcaaggaattataaattaattacgt 3985768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 77 - 253
Target Start/End: Complemental strand, 13396704 - 13396524
Alignment:
Q  77 tagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtattga 176  Q
    ||||||||||| |||||||||||| ||||||||||||  ||||||  || |||||||| | |||||||||||||||| |||||||||||||| |||||||    
T  13396704 tagcaggatctagttaatttaaaacaagttacactctgccattcaaaatacctgaaggagttaccagacttttcaaacgccacaaatcttaaggtattga 13396605  T
Q  177 atatccaaggttgttatgggtt----gacaagcatccatccatctattttctctcttgacaaacttgtgaaattggaccta 253  Q
    ||||   | | ||| || ||||    ||||||| |||||||||| ||||||||||||||||| |||||| | |||||||||    
T  13396604 atatgagatggtgtaataggttgatcgacaagcgtccatccatcaattttctctcttgacaagcttgtgcatttggaccta 13396524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 13396806 - 13396744
Alignment:
Q  1 gtaattgaatacgtgtcttctagattaaatttaccttaaatcaaagaattataaattaattac 63  Q
    |||||||||||||||||||  |||||||||||| ||||| |||| ||||||||||||||||||    
T  13396806 gtaattgaatacgtgtctttcagattaaatttatcttaattcaaggaattataaattaattac 13396744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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