View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10970_high_28 (Length: 251)

Name: NF10970_high_28
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10970_high_28
NF10970_high_28
[»] scaffold0110 (3 HSPs)
scaffold0110 (2-107)||(13663-13769)
scaffold0110 (2-107)||(21400-21506)
scaffold0110 (136-238)||(21924-22026)
[»] chr8 (11 HSPs)
chr8 (11-211)||(7176952-7177152)
chr8 (11-213)||(22800462-22800667)
chr8 (13-102)||(1581489-1581578)
chr8 (13-102)||(14523171-14523260)
chr8 (11-102)||(11989717-11989808)
chr8 (14-88)||(12795955-12796029)
chr8 (11-102)||(8693032-8693123)
chr8 (52-102)||(5423517-5423567)
chr8 (13-102)||(12532328-12532417)
chr8 (12-102)||(13282128-13282221)
chr8 (15-76)||(43976646-43976707)
[»] chr7 (23 HSPs)
chr7 (1-102)||(17503245-17503346)
chr7 (1-213)||(17549868-17550080)
chr7 (2-76)||(1964227-1964301)
chr7 (13-102)||(2842562-2842651)
chr7 (1-97)||(8352643-8352738)
chr7 (10-212)||(1837760-1837961)
chr7 (14-102)||(8488713-8488801)
chr7 (11-114)||(48294026-48294132)
chr7 (14-210)||(8515440-8515634)
chr7 (2-83)||(19735625-19735706)
chr7 (13-122)||(584070-584182)
chr7 (11-100)||(25173480-25173569)
chr7 (13-102)||(44592100-44592189)
chr7 (11-102)||(27399762-27399853)
chr7 (14-102)||(38974813-38974900)
chr7 (11-89)||(21294841-21294919)
chr7 (13-102)||(48557962-48558050)
chr7 (11-126)||(48767846-48767964)
chr7 (11-102)||(8055305-8055396)
chr7 (163-212)||(19735787-19735836)
chr7 (13-80)||(43786686-43786753)
chr7 (11-88)||(3641570-3641647)
chr7 (136-213)||(17503134-17503211)
[»] chr1 (20 HSPs)
chr1 (1-102)||(46688759-46688859)
chr1 (13-102)||(26991775-26991864)
chr1 (1-102)||(28522879-28522980)
chr1 (13-102)||(30627134-30627223)
chr1 (13-102)||(45467983-45468072)
chr1 (11-88)||(23082429-23082506)
chr1 (13-102)||(49650119-49650208)
chr1 (11-102)||(6597462-6597553)
chr1 (11-102)||(27163054-27163145)
chr1 (1-58)||(50011719-50011776)
chr1 (38-102)||(39092967-39093031)
chr1 (10-76)||(38790605-38790671)
chr1 (4-49)||(5939814-5939859)
chr1 (13-102)||(35718836-35718925)
chr1 (11-102)||(2356231-2356323)
chr1 (51-88)||(22767175-22767212)
chr1 (28-80)||(37586495-37586547)
chr1 (13-71)||(47675909-47675967)
chr1 (21-90)||(44343422-44343491)
chr1 (68-101)||(50011647-50011680)
[»] chr6 (8 HSPs)
chr6 (1-210)||(27753002-27753211)
chr6 (11-102)||(6812053-6812144)
chr6 (1-102)||(29465298-29465399)
chr6 (1-102)||(31766425-31766525)
chr6 (10-102)||(12919069-12919161)
chr6 (51-102)||(17096023-17096074)
chr6 (13-76)||(19687610-19687673)
chr6 (136-188)||(6812177-6812229)
[»] chr4 (24 HSPs)
chr4 (10-212)||(13678514-13678715)
chr4 (13-122)||(44991744-44991856)
chr4 (13-102)||(12191524-12191613)
chr4 (2-102)||(56397091-56397191)
chr4 (11-100)||(38068088-38068177)
chr4 (13-122)||(51175526-51175638)
chr4 (11-88)||(36904174-36904251)
chr4 (10-102)||(5744804-5744896)
chr4 (11-102)||(27064454-27064545)
chr4 (11-102)||(27085558-27085649)
chr4 (12-114)||(38168122-38168227)
chr4 (18-122)||(17058793-17058900)
chr4 (13-122)||(38068509-38068627)
chr4 (10-86)||(13665782-13665858)
chr4 (13-89)||(40445767-40445843)
chr4 (10-97)||(30482923-30483010)
chr4 (11-88)||(19853994-19854071)
chr4 (1-102)||(37450811-37450915)
chr4 (2-90)||(4711581-4711665)
chr4 (11-101)||(56228205-56228294)
chr4 (52-97)||(31767838-31767883)
chr4 (52-101)||(45832132-45832181)
chr4 (21-77)||(34929264-34929320)
chr4 (136-209)||(37450946-37451019)
[»] chr3 (23 HSPs)
chr3 (1-102)||(47142747-47142848)
chr3 (11-101)||(1559590-1559680)
chr3 (11-102)||(31833957-31834048)
chr3 (11-102)||(32552306-32552397)
chr3 (1-126)||(25701529-25701657)
chr3 (10-212)||(23059103-23059304)
chr3 (13-122)||(19611149-19611261)
chr3 (11-88)||(1151610-1151687)
chr3 (13-102)||(55222401-55222490)
chr3 (51-212)||(38585977-38586138)
chr3 (1-102)||(46981819-46981920)
chr3 (11-97)||(37526766-37526851)
chr3 (2-65)||(7325564-7325627)
chr3 (12-97)||(14903368-14903453)
chr3 (28-212)||(28131342-28131526)
chr3 (56-100)||(1294572-1294616)
chr3 (12-102)||(5992202-5992285)
chr3 (165-213)||(40243198-40243246)
chr3 (12-91)||(3935755-3935834)
chr3 (15-102)||(13778185-13778271)
chr3 (55-102)||(48098387-48098434)
chr3 (1-46)||(32721914-32721959)
chr3 (163-212)||(47142901-47142950)
[»] chr2 (17 HSPs)
chr2 (1-102)||(25749880-25749980)
chr2 (2-102)||(42029584-42029683)
chr2 (11-102)||(21848228-21848319)
chr2 (10-102)||(37456044-37456136)
chr2 (28-88)||(44059281-44059341)
chr2 (11-88)||(2968869-2968946)
chr2 (13-101)||(10624826-10624914)
chr2 (10-102)||(27559033-27559125)
chr2 (13-102)||(28967600-28967689)
chr2 (11-87)||(37847690-37847766)
chr2 (11-90)||(3703501-3703580)
chr2 (11-102)||(12671787-12671878)
chr2 (13-83)||(12863601-12863671)
chr2 (38-126)||(11916161-11916247)
chr2 (13-102)||(12184735-12184823)
chr2 (38-213)||(39446348-39446521)
chr2 (1-43)||(27957540-27957582)
[»] chr5 (12 HSPs)
chr5 (11-102)||(31066332-31066423)
chr5 (2-97)||(4898182-4898278)
chr5 (11-101)||(565353-565443)
chr5 (11-122)||(31046367-31046481)
chr5 (11-102)||(4396221-4396312)
chr5 (136-210)||(4740334-4740408)
chr5 (12-102)||(8516926-8517016)
chr5 (52-101)||(15958740-15958789)
chr5 (11-102)||(12883183-12883274)
chr5 (11-99)||(30312968-30313056)
chr5 (11-76)||(30350411-30350476)
chr5 (14-88)||(2553196-2553270)
[»] scaffold0568 (1 HSPs)
scaffold0568 (18-122)||(726-833)
[»] scaffold0086 (1 HSPs)
scaffold0086 (13-88)||(33242-33317)
[»] scaffold0020 (1 HSPs)
scaffold0020 (13-90)||(11490-11567)


Alignment Details
Target: scaffold0110 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 13663 - 13769
Alignment:
Q  2 aaaagaag-taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 100  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  13663 aaaagaagctaatagattatttttatataatgatgtaaagttagtgggacctatttaaatattttccattggaatccttattagtgtattgtcattggag 13762  T
Q  101 tcgagtc 107  Q
    |||||||    
T  13763 tcgagtc 13769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 107
Target Start/End: Original strand, 21400 - 21506
Alignment:
Q  2 aaaagaag-taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 100  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  21400 aaaagaagctaatagattatttttatataatgatgtaaagttagtgggacctatttaaatattttccattggaatccttattagtgtattgtcattggag 21499  T
Q  101 tcgagtc 107  Q
    |||||||    
T  21500 tcgagtc 21506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 21924 - 22026
Alignment:
Q  136 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaagtggtttattcaatttgttttga 235  Q
    ||||||||||||||||| || |||||||||||||| ||||||||||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||    
T  21924 ttataaataagtgatgtatatatgtatggtccattgaagaagtctctgttagtggattaccattgtggatgctctaagtggtttattcaatttgttttga 22023  T
Q  236 tgt 238  Q
    |||    
T  22024 tgt 22026  T

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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 211
Target Start/End: Complemental strand, 7177152 - 7176952
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 107  Q
    |||||||||||||| ||||||| ||||||||||||||||  |||||||||| ||| |||||||| |||||||||||||||||||||||||||   |||||    
T  7177152 aataaattatttttgtataatggtgtaaagttagtgggacttatttaagtacttttcattggagcccttattagtgtattgtcattggagtcattgagtc 7177053  T
Q  108 tttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgc 207  Q
     ||||||| ||||||||||         |||||||||| |||||| |||| ||  ||||||| |||||||||  |||||||  |||| ||||||||||||    
T  7177052 cttaatagatactttcatt---aaaaaattataaataaatgatgtgtacacgtggggtccatataagaagtccttattagtgtactatcattatggatgc 7176956  T
Q  208 tcta 211  Q
    ||||    
T  7176955 tcta 7176952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 22800667 - 22800462
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 107  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||||||  || ||||||||||| ||||||||||||||||||||||||   |||||    
T  22800667 aataaattacttttgtataatgatgtaaagttagtgggacctatttaagtacatttcattggagtccctattagtgtattgtcattggagtcattgagtc 22800568  T
Q  108 tttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgc 207  Q
     |||||||  | |||  ||         |||||||||| |||||| |||||||   ||||||||||| |||  ||||||||  ||||||||| |||||||    
T  22800567 cttaatagacattttttttattaaaaaattataaataaatgatgtgtacatgtggagtccatttaaggagttcctattagtgtactaccattgtggatgc 22800468  T
Q  208 tctaag 213  Q
    ||||||    
T  22800467 tctaag 22800462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 1581489 - 1581578
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||| | ||||||||||||| ||||||||  |||||||||| ||| ||||||||||||||||| |||||||||||| |||||    
T  1581489 taaattatttttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattggagtccttattaatgtattgtcattcgagtc 1581578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 14523260 - 14523171
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||| | ||||||||||||| |||||| |  |||||||||| ||| || |||||||||||||||||||||||||||| ||||    
T  14523260 taaattatttttgtttaatgatgtaaagatagtggaacatatttaagtacttttcagtggagtccttattagtgtattgtcattgaagtc 14523171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 11989808 - 11989717
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||| ||||| ||||||||||||| |||||| ||  |||||||| | ||| ||||||||||| | ||||||||||||||||||||||    
T  11989808 aataaattacttttacataatgatgtaaaattagtgagacatatttaagcacttttcattggagtccatgttagtgtattgtcattggagtc 11989717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 12796029 - 12795955
Alignment:
Q  14 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 88  Q
    ||||||||||| | |||||||||||||||||||||  ||||||||||| ||| |||||||||||||| |||||||    
T  12796029 aaattatttttgtttaatgatgtaaagttagtggggcctatttaagtacttttcattggagtccttactagtgta 12795955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 8693123 - 8693032
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||| |||| |||||| ||||||||||||| ||| ||||||||  | ||| ||||||| |||||||| || ||||||||||| ||||    
T  8693123 aataaattacttttgtataataatgtaaagttagtaggacctatttaacaacttttcattggaatccttattggtttattgtcattgaagtc 8693032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 5423517 - 5423567
Alignment:
Q  52 tatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  5423517 tatttaagtacttttcattgaagtccttattagtgtattgtcattggagtc 5423567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 12532417 - 12532328
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||| | ||||||||||||| ||||||||  | |||||||| ||| |||| || || |||||||||||||  ||||||||||    
T  12532417 taaattatttttgtttaatgatgtaaagatagtgggacatgtttaagtacttttcattagaatctttattagtgtattaccattggagtc 12532328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 13282128 - 13282221
Alignment:
Q  12 ataaattatttttatataatgatgtaaagttagtgggatctatttaagta---ttttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||| |||| | ||||||||||||||||||||||||||||||| ||   |||  ||| ||||| ||  |||||||||||||||| |||||    
T  13282128 ataaattagttttgtttaatgatgtaaagttagtgggatctatttaattactttttgtcatgggagttctggttagtgtattgtcattagagtc 13282221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 43976646 - 43976707
Alignment:
Q  15 aattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 76  Q
    |||| ||||| | ||||||||||||| ||||||||| |||||||||| ||| ||||||||||    
T  43976646 aattgtttttgtttaatgatgtaaagatagtgggatatatttaagtacttttcattggagtc 43976707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 17503346 - 17503245
Alignment:
Q  1 caaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 100  Q
    |||||||||||||||||||||||| |||||| ||||||||||| |||||  ||||||||||||||  |||||||||||||||||||||||||||||||||    
T  17503346 caaaagaagtaataaattatttttgtataattatgtaaagttactgggacttatttaagtattttttattggagtccttattagtgtattgtcattggag 17503247  T
Q  101 tc 102  Q
    ||    
T  17503246 tc 17503245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 17549868 - 17550080
Alignment:
Q  1 caaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 100  Q
    |||||||||||||||||||||||| |||||| ||||||||||| |||||  ||||||||||||||  |||||||||||||||||||||||||||||||||    
T  17549868 caaaagaagtaataaattatttttgtataattatgtaaagttactgggacttatttaagtattttttattggagtccttattagtgtattgtcattggag 17549967  T
Q  101 tc---gagtctttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactacca 197  Q
    ||   || || ||||||  || |||||||         ||||||||||||||||| | || ||  |||||||||||||||||  ||||||| ||||  ||    
T  17549968 tcattgaatccttaatatgtaatttcattaaaaaa---ttataaataagtgatgtgttcacgtggggtccatttaagaagtccttattagtggactgtca 17550064  T
Q  198 ttatggatgctctaag 213  Q
    || |||||||| ||||    
T  17550065 ttctggatgctttaag 17550080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 1964301 - 1964227
Alignment:
Q  2 aaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  |||||||||    
T  1964301 aaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaaatactttttattggagtc 1964227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 2842562 - 2842651
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||| | |||||||||| || ||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  2842562 taaattatttttgtttaatgatgtacagatagtgggacatatttaaatatttttcattggagtccttattagtgtattgtcattggagtc 2842651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 8352643 - 8352738
Alignment:
Q  1 caaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 97  Q
    ||||||||||||||| || ||||| | ||||||||||||||||||| ||  |||||||||||||| ||||| |||||||||||||||||||||||||    
T  8352643 caaaagaagtaataattttttttttt-taatgatgtaaagttagtgagacttatttaagtatttttcattgaagtccttattagtgtattgtcattg 8352738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 1837760 - 1837961
Alignment:
Q  10 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 106  Q
    |||||||||| |||| | |||||||| ||||||||||||   |||||||||| |||  ||| |||||||||||||||||||||||||||||||   ||||    
T  1837760 taataaattacttttgtttaatgatgcaaagttagtggggcatatttaagtactttttatttgagtccttattagtgtattgtcattggagtcattgagt 1837859  T
Q  107 ctttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatg 206  Q
    ||||||||  |||||| |||         |||||||||||||| || || | ||  |||||||||||| |||||||||||    ||||||||||||||||    
T  1837860 ctttaataagtacttttatt---aatatattataaataagtgacgtgta-acgtggggtccatttaaggagtctctattaaggaactaccattatggatg 1837955  T
Q  207 ctctaa 212  Q
    ||||||    
T  1837956 ctctaa 1837961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 8488801 - 8488713
Alignment:
Q  14 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||||| | ||||||||||||| ||||||||  ||||||||||||||  |||| ||||||||||||||||||| ||||||||||    
T  8488801 aaattatttttgtttaatgatgtaaagatagtgggacatatttaagtattttttattgaagtccttattagtgtattgccattggagtc 8488713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 48294132 - 48294026
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 107  Q
    |||||||||||||| | |||||||||||||||||||||| |||||||  || ||| |||||||||||||||||||||| |  ||||||||||   |||||    
T  48294132 aataaattatttttgtttaatgatgtaaagttagtgggacctatttagatactttacattggagtccttattagtgtacttccattggagtcaatgagtc 48294033  T
Q  108 tttaata 114  Q
    |||||||    
T  48294032 tttaata 48294026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 8515634 - 8515440
Alignment:
Q  14 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtcttt 110  Q
    ||||||||||| | |||||||||||||  |||||||  ||||||||||||||  ||| |||||||||||||||||||| ||||||||||   || || ||    
T  8515634 aaattatttttgtttaatgatgtaaagacagtgggacatatttaagtattttttattcgagtccttattagtgtattgccattggagtcattgaatcctt 8515535  T
Q  111 aatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctct 210  Q
    ||||| |||||| |||         ||||||||||||||||| | || ||  |||||||||||||||||  ||||||   ||||||||| ||||||||||    
T  8515534 aataggtacttttatt----aaaaattataaataagtgatgtgt-cacgtggggtccatttaagaagtccttattagagaactaccattgtggatgctct 8515440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 19735625 - 19735706
Alignment:
Q  2 aaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttatta 83  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||| |||  |||||| |||||||||    
T  19735625 aaaagaagtaataaattatttttgtataatgatataaagttagtgagacctatttaagtactttttattggattccttatta 19735706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 584070 - 584182
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctt 109  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| |||||||||| || ||||||||||| ||||||||||   ||||| |    
T  584070 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtctttgttagtgtattgccattggagtcattgagtcct 584169  T
Q  110 taatagctacttt 122  Q
    |||||| ||||||    
T  584170 taatagatacttt 584182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 25173480 - 25173569
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 100  Q
    ||||||||| |||| |||||||||||||| |||||| || ||||||||||| ||| |||| |||||  | ||||||||||||||||||||    
T  25173480 aataaattacttttgtataatgatgtaaaattagtgagacctatttaagtacttttcatttgagtcactgttagtgtattgtcattggag 25173569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 44592100 - 44592189
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||| || | ||||||||||||| || |||||  |||||||||| ||| |||| ||||||||||||||||||||| |||||||||    
T  44592100 taaattattgttgtttaatgatgtaaagataatgggacatatttaagtacttttcattagagtccttattagtgtattgttattggagtc 44592189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 27399762 - 27399853
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||| ||||  |||||||||||||| |||||| | |||||||| || ||| ||||||||||  | ||||||||||||||||||||||    
T  27399762 aataaattacttttgcataatgatgtaaaggtagtggaacctatttaattacttttcattggagtcaatgttagtgtattgtcattggagtc 27399853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 38974900 - 38974813
Alignment:
Q  14 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||||| | ||||||||||| |||||||||  ||||||||||| ||| | || ||||||||||||||||| | |||||||||||    
T  38974900 aaattatttttgtttaatgatgtaa-gttagtggggcctatttaagtacttttctttagagtccttattagtgtactctcattggagtc 38974813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 21294841 - 21294919
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtat 89  Q
    |||||||||||| | | |||||||||||||||||| |||  ||||||| ||||||  ||||||||| ||||||||||||    
T  21294841 aataaattatttgtgtttaatgatgtaaagttagtaggacatatttaaatatttttaattggagtctttattagtgtat 21294919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 48557962 - 48558050
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||| |  |||||||||||| ||||| ||| |||||||||| ||| ||||||| || |||||| |||||| |||||||||||    
T  48557962 taaattatttttgttcaatgatgtaaagatagtgcgat-tatttaagtacttttcattggactcattattaatgtattctcattggagtc 48558050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 48767846 - 48767964
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 107  Q
    |||| |||| |||| ||||||||||||||||||||| ||  |||||||| | ||| ||||||||||| | || |||||||  ||||||||||   |||||    
T  48767846 aatatattacttttgtataatgatgtaaagttagtgagacatatttaagcacttttcattggagtccctgttggtgtattaccattggagtcattgagtc 48767945  T
Q  108 tttaatagctactttcatt 126  Q
     |||||||  |||||||||    
T  48767946 cttaataggaactttcatt 48767964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 8055396 - 8055305
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||| |||||| ||||||||||||||||||| || ||||||||  | |||  ||   | ||||| ||||||||||||||||||||||    
T  8055396 aataaattacttttatgtaatgatgtaaagttagtgagacctatttaatcactttttatcatattccttgttagtgtattgtcattggagtc 8055305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 19735787 - 19735836
Alignment:
Q  163 ggtccatttaagaagtctctattagtagactaccattatggatgctctaa 212  Q
    |||||||||||| ||||||||||||| |||||||||| ||||| ||||||    
T  19735787 ggtccatttaaggagtctctattagtggactaccattgtggatactctaa 19735836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 43786686 - 43786753
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtcctta 80  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| | ||||||||||||    
T  43786686 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttctttggagtcctta 43786753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 3641570 - 3641647
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 88  Q
    |||||||||||||| | ||||| | ||| ||||||||| | |||||||||| |||  |||| |||| |||||||||||    
T  3641570 aataaattatttttgtttaatgctataatgttagtggggtttatttaagtacttttaattgaagtctttattagtgta 3641647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 213
Target Start/End: Complemental strand, 17503211 - 17503134
Alignment:
Q  136 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaag 213  Q
    ||||||||||||||||| | || ||  |||||||||||||||||  ||||||| ||||  |||| |||||||| ||||    
T  17503211 ttataaataagtgatgtgttcacgtggggtccatttaagaagtccttattagtggactgtcattctggatgctttaag 17503134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 46688859 - 46688759
Alignment:
Q  1 caaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||| ||| |||||||||| |||||||||||||||||||||||    
T  46688859 caaaagaagtaataaattatttttgtataatgatgtaaagttagtggg-cctatttaagtacttttcattggagtcattattagtgtattgtcattggag 46688761  T
Q  101 tc 102  Q
    ||    
T  46688760 tc 46688759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 26991864 - 26991775
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| |||||||||||||||||||||||||| |||||||||    
T  26991864 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtccttattagtgtattgttattggagtc 26991775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 28522980 - 28522879
Alignment:
Q  1 caaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 100  Q
    ||||||||||||||||||||||||  |||||||| |||||||| || |  ||||||||  | ||| |||| |||||||||||||||||||||||||||||    
T  28522980 caaaagaagtaataaattatttttgcataatgatataaagttaatgtggcctatttaaaaactttgcattagagtccttattagtgtattgtcattggag 28522881  T
Q  101 tc 102  Q
    ||    
T  28522880 tc 28522879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 30627223 - 30627134
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||| | ||||||||||||| ||||||||  |||||||||||||| |||| ||||| |||||| ||||||||||||||||||    
T  30627223 taaattatttttgtttaatgatgtaaagatagtgggacatatttaagtatttttcatttgagtctttattaatgtattgtcattggagtc 30627134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 45468072 - 45467983
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||| | ||||||||||||| ||||||||  ||||||| |||||| |||||||||| |||| ||||||||||||||||||||    
T  45468072 taaattatttttgtttaatgatgtaaagatagtgggacatatttaaatatttttcattggagtcattatcagtgtattgtcattggagtc 45467983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 23082429 - 23082506
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 88  Q
    |||||||||||||| | ||||| |||||||||||||   |||||||||||||||| ||||||||||||||||||||||    
T  23082429 aataaattatttttgtttaatgttgtaaagttagtgaagtctatttaagtatttttcattggagtccttattagtgta 23082506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 49650119 - 49650208
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| ||||||||||||||||| |||||||| |||||||||    
T  49650119 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtccttattaatgtattgttattggagtc 49650208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 6597462 - 6597553
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||| | |||| |||||||||||||||||||||  | |||||||| |||| | ||||||||||||| |||||||| |||||||||||||    
T  6597462 aataaatcacttttgtataatgatgtaaagttagtgtaacctatttaaatattattcattggagtccttgttagtgtactgtcattggagtc 6597553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 27163145 - 27163054
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||| |||| |||||| ||||||||||||||  | ||||||||| ||||| ||||||||||  | ||||||||||||||||||||||    
T  27163145 aataaattacttttgtataattatgtaaagttagtgtcacctatttaagcatttttcattggagtctctgttagtgtattgtcattggagtc 27163054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 50011776 - 50011719
Alignment:
Q  1 caaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaa 58  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||| | |||||||    
T  50011776 caaaagaagtaataaattatttttgtataatgatgtaaagttagcggggtatatttaa 50011719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 39092967 - 39093031
Alignment:
Q  38 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||||||  |||||||||| |||  |||||||||||||||| ||||||||||||||||||    
T  39092967 aagttagtgggacatatttaagtacttttaattggagtccttattattgtattgtcattggagtc 39093031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 38790671 - 38790605
Alignment:
Q  10 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 76  Q
    |||||||||| |||| ||||||||||||||||||||| ||  |||||||| ||||| ||||||||||    
T  38790671 taataaattacttttgtataatgatgtaaagttagtgagacttatttaagcatttttcattggagtc 38790605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 5939814 - 5939859
Alignment:
Q  4 aagaagtaataaattatttttatataatgatgtaaagttagtggga 49  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||    
T  5939814 aagaagtaataaattatttttgtataatgatgtaaagttagaggga 5939859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 35718925 - 35718836
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||| | |||| | |||||| ||||| ||  |||||||||| ||| |||||| |||||| ||||||||||| ||||||||||    
T  35718925 taaattatttttgtttaataaagtaaagatagtgagacatatttaagtacttttcattggggtccttgttagtgtattgccattggagtc 35718836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 2356231 - 2356323
Alignment:
Q  11 aataaattatttt-tatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||||||| |||||||||||||||||| ||||| |||| ||||| || |||  |||||||||   |||| |||||||| |||||||||    
T  2356231 aataaattattttttatataatgatgtaaagtcagtggaatctttttaaatactttttattggagtctcaattaatgtattgttattggagtc 2356323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 22767175 - 22767212
Alignment:
Q  51 ctatttaagtattttccattggagtccttattagtgta 88  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  22767175 ctatttaagtatttttcattggagtccttattagtgta 22767212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 37586547 - 37586495
Alignment:
Q  28 taatgatgtaaagttagtgggatctatttaagtattttccattggagtcctta 80  Q
    |||||||||||||||| || ||  |||||||||||||| ||||||||||||||    
T  37586547 taatgatgtaaagttaatgagaattatttaagtatttttcattggagtcctta 37586495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 47675967 - 47675909
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattg 71  Q
    ||||||| |||| | ||||||||||||| ||||||||  |||||||||||||| |||||    
T  47675967 taaattacttttgtttaatgatgtaaagatagtgggacatatttaagtatttttcattg 47675909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 44343422 - 44343491
Alignment:
Q  21 ttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 90  Q
    |||| ||||||| || ||||||| || ||  |||||||||||||| |||||||||||||| |||| ||||    
T  44343422 ttttgtataatgttgcaaagttaatgagacatatttaagtatttttcattggagtccttactagtatatt 44343491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 101
Target Start/End: Complemental strand, 50011680 - 50011647
Alignment:
Q  68 attggagtccttattagtgtattgtcattggagt 101  Q
    |||||||||||||||| |||||||||||||||||    
T  50011680 attggagtccttattattgtattgtcattggagt 50011647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 27753211 - 27753002
Alignment:
Q  1 caaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 100  Q
    ||||||||||||||||||| |||| | ||||| ||||||||||||||||  |||||||||| ||| |||| |||||||||||||||||||| |||| |||    
T  27753211 caaaagaagtaataaattagttttgtttaatgttgtaaagttagtgggacttatttaagtacttttcatttgagtccttattagtgtattgacatttgag 27753112  T
Q  101 tc---gagtctttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactacca 197  Q
    ||   || || ||||||| |||||| |||         ||||||||||||||| | |||||||  | || ||||||| ||||||||||||||||||||||    
T  27753111 tcattgaatccttaataggtacttttatt---aaaaaattataaataagtgatatgtacatgtgagatctatttaaggagtctctattagtagactacca 27753015  T
Q  198 ttatggatgctct 210  Q
     |||| |||||||    
T  27753014 ctatgaatgctct 27753002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 6812053 - 6812144
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||||| |||||||||||||||||||||| | ||||||||||| ||| |||||||||| |||||||||||||| ||||||||||    
T  6812053 aataaattatttttgtataatgatgtaaagttagtggaacctatttaagtacttttcattggagtctttattagtgtattgccattggagtc 6812144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 29465399 - 29465298
Alignment:
Q  1 caaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 100  Q
    |||||||| ||||||| || |||| |||||||||||||| |||||| |||||||||||| ||||| |||||||||| ||||||||| ||||||||| |||    
T  29465399 caaaagaaataataaactaattttgtataatgatgtaaacttagtgagatctatttaagaatttttcattggagtcattattagtgaattgtcatttgag 29465300  T
Q  101 tc 102  Q
    ||    
T  29465299 tc 29465298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 31766525 - 31766425
Alignment:
Q  1 caaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 100  Q
    ||||| |||| |||||| |||||| |||||| ||||||||||||||||||||||||||||| | |  |||||||| |||||||||||||||||||| |||    
T  31766525 caaaataagttataaataatttttgtataataatgtaaagttagtgggatctatttaagtactctttattggagt-cttattagtgtattgtcatttgag 31766427  T
Q  101 tc 102  Q
    ||    
T  31766426 tc 31766425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 12919069 - 12919161
Alignment:
Q  10 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||||||||| | |||| | | ||||||||||||   |||||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  12919069 taataaattatttttgtttaataaggcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtc 12919161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 17096074 - 17096023
Alignment:
Q  51 ctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  17096074 ctatttaagtacttttcattgaagtccttattagtgtattgtcattggagtc 17096023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 19687610 - 19687673
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 76  Q
    |||||||||||| | ||||||||||||| || |||||  |||||||||| ||| ||||||||||    
T  19687610 taaattatttttgtttaatgatgtaaagatactgggacatatttaagtacttttcattggagtc 19687673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 6812177 - 6812229
Alignment:
Q  136 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagt 188  Q
    |||||||||| |||| | ||||||| |||||||||||||||  ||||||||||    
T  6812177 ttataaataaatgatatgtacatgtgtggtccatttaagaaacctctattagt 6812229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 13678715 - 13678514
Alignment:
Q  10 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 106  Q
    ||||||||||||||| | |||||||| ||||||||||||   |||||||||| ||| |||| |||||||||||||||||||||||||||||||   ||||    
T  13678715 taataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtgtattgtcattggagtcattgagt 13678616  T
Q  107 ctttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatg 206  Q
    ||||||||  |||||| |||         |||||||||||||| || || | ||  |||||||||||| |||||||||||    ||||||||||||||||    
T  13678615 ctttaataagtacttttatt---aatatattataaataagtgacgtgta-acgtggggtccatttaaggagtctctattaaggaactaccattatggatg 13678520  T
Q  207 ctctaa 212  Q
    ||||||    
T  13678519 ctctaa 13678514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 44991856 - 44991744
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctt 109  Q
    |||||||||||| | ||||||||||||| ||||||||  |||||||||||||| ||||||||||||||||||||||||| ||||||||||   ||||| |    
T  44991856 taaattatttttgtttaatgatgtaaagatagtgggacatatttaagtatttttcattggagtccttattagtgtattgccattggagtcattgagtcct 44991757  T
Q  110 taatagctacttt 122  Q
    |||||| ||||||    
T  44991756 taataggtacttt 44991744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 12191524 - 12191613
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12191524 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtatttttcattggagtccttattagtgtattgtcattggagtc 12191613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 56397191 - 56397091
Alignment:
Q  2 aaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 101  Q
    ||||||||| ||||||||||||| |||||||||||||||||| ||  |  |||||||||||||| ||||| |||||||||| | ||||||||||||||||    
T  56397191 aaaagaagttataaattatttttgtataatgatgtaaagttaatgacacatatttaagtatttttcattgaagtccttattcgcgtattgtcattggagt 56397092  T
Q  102 c 102  Q
    |    
T  56397091 c 56397091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 38068088 - 38068177
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 100  Q
    |||||||||||||| | |||||||||||||||||||||  ||||||||||| |||  ||||||||||||||||||||| | |||||||||    
T  38068088 aataaattatttttgtttaatgatgtaaagttagtggggcctatttaagtactttttattggagtccttattagtgtactctcattggag 38068177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 51175526 - 51175638
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctt 109  Q
    |||||||||||  | ||||||||||||| ||||||||  ||||||||||||||  |||||||||||||||| ||||||| ||||||||||   ||||| |    
T  51175526 taaattattttcgtttaatgatgtaaagatagtgggacatatttaagtattttgaattggagtccttattaatgtattgccattggagtcattgagtcct 51175625  T
Q  110 taatagctacttt 122  Q
    |||||| ||||||    
T  51175626 taataggtacttt 51175638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 36904174 - 36904251
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 88  Q
    |||||||||||||| | ||||||||||||||||||||   ||||||||||||||| || |||||||||||||||||||    
T  36904174 aataaattatttttgtttaatgatgtaaagttagtggagcctatttaagtatttttcactggagtccttattagtgta 36904251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 102
Target Start/End: Complemental strand, 5744896 - 5744804
Alignment:
Q  10 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||||||||| | |||| ||| ||||||||||||   |||||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  5744896 taataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtc 5744804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 27064545 - 27064454
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||||| ||||||||||||||||||||| ||  |||||||  | |||  |||||||||| |||||||||||||||||| |||||    
T  27064545 aataaattatttttgtataatgatgtaaagttagtgagacatatttaaacagtttttattggagtccctattagtgtattgtcattagagtc 27064454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 27085649 - 27085558
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||||| ||||||||||||||||||||| ||  |||||||  | |||  |||||||||| |||||||||||||||||| |||||    
T  27085649 aataaattatttttgtataatgatgtaaagttagtgagacatatttaaacagtttttattggagtccctattagtgtattgtcattagagtc 27085558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 38168227 - 38168122
Alignment:
Q  12 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtct 108  Q
    ||||||||||||| | |||||||||||| ||||||||   |||||||||| ||| ||||||||||||||||| ||||||   |||||||||   ||||||    
T  38168227 ataaattatttttgtttaatgatgtaaaattagtggggcttatttaagtacttttcattggagtccttattaatgtatttctattggagtcattgagtct 38168128  T
Q  109 ttaata 114  Q
    ||||||    
T  38168127 ttaata 38168122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 17058900 - 17058793
Alignment:
Q  18 tatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaata 114  Q
    ||||||| | ||||||||||||| |||||||  ||||||||||| ||| |||| ||||||||||||||||| |   |||||||||   ||||| ||||||    
T  17058900 tatttttgtttaatgatgtaaagatagtggggcctatttaagtacttttcatttgagtccttattagtgtactcctattggagtcattgagtccttaata 17058801  T
Q  115 gctacttt 122  Q
    ||||||||    
T  17058800 gctacttt 17058793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 38068509 - 38068627
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtggga------tctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---g 103  Q
    |||||||||||| | ||||||||||||| ||||||||      | |||||||||| ||| | |||||||||||||||||||||||||||| |||||   |    
T  38068509 taaattatttttctttaatgatgtaaagatagtgggacatatttatatttaagtacttttctttggagtccttattagtgtattgtcattagagtcattg 38068608  T
Q  104 agtctttaatagctacttt 122  Q
    |||| ||||||| ||||||    
T  38068609 agtccttaataggtacttt 38068627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 13665858 - 13665782
Alignment:
Q  10 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtg 86  Q
    ||||||||||||||| | |||||||| ||||||||||||   |||||||||| ||| |||| |||||||||||||||    
T  13665858 taataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtg 13665782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 40445767 - 40445843
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtat 89  Q
    ||||| |||||| | ||||||||||||| |||||||   |||||||||||||| | |||||||||||||||||||||    
T  40445767 taaatcatttttgtttaatgatgtaaagatagtgggccatatttaagtatttttcgttggagtccttattagtgtat 40445843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 30483010 - 30482923
Alignment:
Q  10 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 97  Q
    |||||||||| |||| |||||||||||||||||| || || |||||||| ||||||  |||||||||  ||||| |||||| ||||||    
T  30483010 taataaattacttttgtataatgatgtaaagttaatgcgacctatttaaatattttttattggagtctctattaatgtattatcattg 30482923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 19853994 - 19854071
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 88  Q
    |||||||||||||| | | |||||||||||||||||||  ||||||||||| |||  |||  ||||||||||||||||    
T  19853994 aataaattatttttgtttgatgatgtaaagttagtggggcctatttaagtactttttattaaagtccttattagtgta 19854071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 37450811 - 37450915
Alignment:
Q  1 caaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtat----tttccattggagtccttattagtgtattgtcatt 96  Q
    ||||||||||||||||||||||||   |||||||||||| ||||||| | ||||||||||||    |||  |||| |||| | |||||| ||||||||||    
T  37450811 caaaagaagtaataaattatttttgggtaatgatgtaaaattagtgg-acctatttaagtatattttttttattgaagtcatcattagtatattgtcatt 37450909  T
Q  97 ggagtc 102  Q
    ||||||    
T  37450910 ggagtc 37450915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 90
Target Start/End: Original strand, 4711581 - 4711665
Alignment:
Q  2 aaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 90  Q
    ||||||| ||||||||||||||| | |||||||||||||||||||  |  ||||||||    || ||||||||||||||||| ||||||    
T  4711581 aaaagaaataataaattatttttgtttaatgatgtaaagttagtgcaacatatttaag----tttcattggagtccttattaatgtatt 4711665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 56228294 - 56228205
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 101  Q
    ||||||||| |||| | ||||||||||| ||||||||  ||||||||| || ||| ||||||||||||||||| |||| |  |||||||||    
T  56228294 aataaattagttttgtttaatgatgtaa-gttagtggtgtctatttaaatacttttcattggagtccttattaatgtacttccattggagt 56228205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 31767883 - 31767838
Alignment:
Q  52 tatttaagtattttccattggagtccttattagtgtattgtcattg 97  Q
    |||||||||| ||| ||||||||||| |||||||||||||||||||    
T  31767883 tatttaagtacttttcattggagtccatattagtgtattgtcattg 31767838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 45832181 - 45832132
Alignment:
Q  52 tatttaagtattttccattggagtccttattagtgtattgtcattggagt 101  Q
    ||||||||||  || ||||||||||||||||||||||||| |||||||||    
T  45832181 tatttaagtacctttcattggagtccttattagtgtattgccattggagt 45832132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 34929264 - 34929320
Alignment:
Q  21 ttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtcc 77  Q
    ||||||||||| ||||||||||||||| |  |||||| ||||||| |||||||||||    
T  34929264 ttttatataataatgtaaagttagtggaacatatttaggtatttttcattggagtcc 34929320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 37450946 - 37451019
Alignment:
Q  136 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctc 209  Q
    |||||||||||||| ||  ||||||  | || |||||||||||| |||||| | |||||||||| |||||||||    
T  37450946 ttataaataagtgacgtgcacatgtgggatctatttaagaagtccctattaatggactaccattgtggatgctc 37451019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 47142747 - 47142848
Alignment:
Q  1 caaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 100  Q
    ||||| |||||||||||||||||| | || |||||||||||||||| || ||||||||||| ||| ||||||||||||||||||| | ||||||||||||    
T  47142747 caaaataagtaataaattatttttgtttagtgatgtaaagttagtgagacctatttaagtagttttcattggagtccttattagtatcttgtcattggag 47142846  T
Q  101 tc 102  Q
    ||    
T  47142847 tc 47142848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 1559680 - 1559590
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 101  Q
    ||||||| |||||| ||||||||||||||||||||| || ||||||||||||||| |||| |||| ||||||||||||||| |||||||||    
T  1559680 aataaataatttttgtataatgatgtaaagttagtgagacctatttaagtatttttcattagagttcttattagtgtattgacattggagt 1559590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 31833957 - 31834048
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||  ||| |||| |||||||||||| | | |||||||||    
T  31833957 aataaattatttttgtttaatgatgtaaagttagtgggatctatttaagtattttttattagagttcttattagtgtacttttattggagtc 31834048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 32552306 - 32552397
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||| || ||||| | |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| | |||||||||||    
T  32552306 aataatttttttttgtttaatgatgtaaagttaatgggacctatttaagtatttttcattggagtccttattagtgtactctcattggagtc 32552397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 25701657 - 25701529
Alignment:
Q  1 caaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 100  Q
    |||||||| ||||||||||||||| |||||| |||||||||| ||| ||  |||||||||| |||  |||| ||| ||||||||||||||||||||||||    
T  25701657 caaaagaaataataaattatttttgtataataatgtaaagttggtgagacttatttaagtacttttaattgaagttcttattagtgtattgtcattggag 25701558  T
Q  101 tc---gagtctttaatagctactttcatt 126  Q
    ||   || || ||||||| ||||||||||    
T  25701557 tctttgaatccttaataggtactttcatt 25701529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 23059103 - 23059304
Alignment:
Q  10 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 106  Q
    ||||||||||||||| | |||||||| ||||||||||||   |||||||||| ||| |||| ||||||||||||||| |||| ||||||||||   ||||    
T  23059103 taataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtggattgccattggagtcattgagt 23059202  T
Q  107 ctttaatagctactttcattnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatg 206  Q
    ||||||||  |||||| |||         |||||||||||||| || || | ||  |||||||||||| ||||| |||||    ||||||||||||||||    
T  23059203 ctttaataagtacttttatt---aatatattataaataagtgacgtgta-acgtggggtccatttaaggagtctttattaaggaactaccattatggatg 23059298  T
Q  207 ctctaa 212  Q
    ||||||    
T  23059299 ctctaa 23059304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 19611149 - 19611261
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctt 109  Q
    |||||||||||| | ||||||||||||| ||||||||  |||||||||| ||| ||||| | | ||||||||||||||||||||||||||   ||||| |    
T  19611149 taaattatttttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattgaatttcttattagtgtattgtcattggagtcattgagtcct 19611248  T
Q  110 taatagctacttt 122  Q
    |||||| ||||||    
T  19611249 taataggtacttt 19611261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 1151687 - 1151610
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 88  Q
    |||||||||||||| | |||||||||||||||||||||  ||||||||||| |||  |||||||||||||||||||||    
T  1151687 aataaattatttttgtttaatgatgtaaagttagtggggcctatttaagtactttttattggagtccttattagtgta 1151610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 55222401 - 55222490
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| |||||||||  |||||||||||||||||||||||||    
T  55222401 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtaattttcattggagtatttattagtgtattgtcattggagtc 55222490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 212
Target Start/End: Original strand, 38585977 - 38586138
Alignment:
Q  51 ctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcattnnnnnnnnnttataaataagt 147  Q
    |||||||||||| ||  ||||||||| |||||||||||||||||||||||||   ||||| ||||||||||||||||||         ||||||||||||    
T  38585977 ctatttaagtatatttgattggagtctttattagtgtattgtcattggagtcattgagtccttaatagctactttcatt---aaaaaattataaataagt 38586073  T
Q  148 gatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaa 212  Q
     | || |||| ||   ||||||||||| ||||| | |||||  ||||||||| ||||||||||||    
T  38586074 aacgtgtacaagtgaagtccatttaaggagtctatgttagtgtactaccattgtggatgctctaa 38586138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 46981819 - 46981920
Alignment:
Q  1 caaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 100  Q
    ||||||||||||| ||||| |||| ||||||||||||||||||||| ||  ||||||  || ||| || || ||  ||||||||||||||||||||||||    
T  46981819 caaaagaagtaatgaattacttttgtataatgatgtaaagttagtgagacttatttagatacttttcaatgaagctcttattagtgtattgtcattggag 46981918  T
Q  101 tc 102  Q
    ||    
T  46981919 tc 46981920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 37526851 - 37526766
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 97  Q
    ||||||||||||| |||||||||||||||||||||   || |||||||||||||| ||||| ||||  ||||||| |||||||||||    
T  37526851 aataaattatttt-atataatgatgtaaagttagtaaaatatatttaagtatttttcattgaagtctctattagtttattgtcattg 37526766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 7325627 - 7325564
Alignment:
Q  2 aaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 65  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| ||  ||||||| ||||||    
T  7325627 aaaagaagtaataaattatttttgtttaatgatgtaaagttagtgagaaatatttaaatatttt 7325564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 97
Target Start/End: Original strand, 14903368 - 14903453
Alignment:
Q  12 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 97  Q
    ||||||||||||| | |||||||| ||||||||||||   ||||||  || ||| |||| ||||| ||||||||||||||||||||    
T  14903368 ataaattatttttgtttaatgatgcaaagttagtggggcatatttatatacttttcatttgagtcattattagtgtattgtcattg 14903453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 212
Target Start/End: Original strand, 28131342 - 28131526
Alignment:
Q  28 taatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag---tcgagtctttaatagctactttca 124  Q
    ||||||||||||||||||| ||  |||||||||| |||  || ||||||||| ||||||||||  ||||||||   ||| ||||||||||| |||||| |    
T  28131342 taatgatgtaaagttagtgagacttatttaagtaatttttatgggagtccttgttagtgtattaccattggagtcatcgggtctttaatagatactttta 28131441  T
Q  125 ttnnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaa 212  Q
    ||         ||||||||||||||||| ||||||   | |||||||||| |||| ||||||  ||| ||||||| | ||||||||||    
T  28131442 tt--aaaaaaattataaataagtgatgtgtacatgcgggatccatttaaggagtccctatta-aagattaccattgtagatgctctaa 28131526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 1294572 - 1294616
Alignment:
Q  56 taagtattttccattggagtccttattagtgtattgtcattggag 100  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||    
T  1294572 taagtacttttcattggagtccttattagtgtattgtcattggag 1294616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 5992285 - 5992202
Alignment:
Q  12 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||||||||| ||||||||||||| ||||||||  ||| |       || ||||||||||||||||||||||||||||||| ||||    
T  5992285 ataaattatttttatttaatgatgtaaagatagtgggacatatct-------tttcattggagtccttattagtgtattgtcattgaagtc 5992202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 40243198 - 40243246
Alignment:
Q  165 tccatttaagaagtctctattagtagactaccattatggatgctctaag 213  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  40243198 tccatttaaggagtctctattagtagattaccattgtggatgctctaag 40243246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 3935834 - 3935755
Alignment:
Q  12 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattg 91  Q
    ||||||||||||| | ||||||||||||| || || ||  |||||||||| ||| ||||||||||||| |||| ||||||    
T  3935834 ataaattatttttgtttaatgatgtaaagataatgagacatatttaagtacttttcattggagtccttgttagagtattg 3935755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 13778185 - 13778271
Alignment:
Q  15 aattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||| |||||||||||||||||| ||||||| ||  |||||||| | ||| |||||||||| || ||| |||||||||||| |||||    
T  13778185 aattacttttatataatgatgtaa-gttagtgagacatatttaagcacttttcattggagtctttgttaatgtattgtcattagagtc 13778271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 48098387 - 48098434
Alignment:
Q  55 ttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||  |||||||||||||||| ||||||||||||||||||    
T  48098387 ttaagtattttttattggagtccttattaatgtattgtcattggagtc 48098434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32721959 - 32721914
Alignment:
Q  1 caaaagaagtaataaattatttttatataatgatgtaaagttagtg 46  Q
    ||||||| ||||||||||| ||||  ||||||||||||||||||||    
T  32721959 caaaagatgtaataaattacttttgaataatgatgtaaagttagtg 32721914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 47142901 - 47142950
Alignment:
Q  163 ggtccatttaagaagtctctattagtagactaccattatggatgctctaa 212  Q
    |||||||||||| ||||||| ||||| |||||||||| |||||| |||||    
T  47142901 ggtccatttaaggagtctcttttagtggactaccattgtggatggtctaa 47142950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 25749980 - 25749880
Alignment:
Q  1 caaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 100  Q
    ||||| |||||||||||||||||| |||||| |||||||||||||||||  |||||||||||||| || |||||| ||||||||||||||| ||||||||    
T  25749980 caaaataagtaataaattatttttgtataataatgtaaagttagtgggacatatttaagtatttttca-tggagttcttattagtgtattgccattggag 25749882  T
Q  101 tc 102  Q
    ||    
T  25749881 tc 25749880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 42029683 - 42029584
Alignment:
Q  2 aaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 101  Q
    ||||||| |||||| |||||||| | |||||||||||||||||| |||| |||||||||||||| ||||| |||| ||||||||||||||||||||||||    
T  42029683 aaaagaaataataa-ttatttttgtttaatgatgtaaagttagttggatttatttaagtatttttcattgaagtctttattagtgtattgtcattggagt 42029585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 21848319 - 21848228
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||||||| |||  ||||||||| | ||||||||||| |||||||||||    
T  21848319 aataaattatttttgtataatgatataaagttagtgggacctatttaagtactttttattggagtcttgattagtgtattttcattggagtc 21848228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 37456044 - 37456136
Alignment:
Q  10 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||||||||| | |||| ||| ||||||||||||   |||||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  37456044 taataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtc 37456136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 44059281 - 44059341
Alignment:
Q  28 taatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 88  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  44059281 taatgacgtaaagttagtgggatctatttaagtacttttcattggagtccttattagtgta 44059341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 2968946 - 2968869
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 88  Q
    |||||||||||||| | ||||||||||||||||||||   ||||||||||| ||| | ||||||||||||||||||||    
T  2968946 aataaattatttttgtttaatgatgtaaagttagtggagcctatttaagtacttttcgttggagtccttattagtgta 2968869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 10624826 - 10624914
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 101  Q
    |||||||||||| | |||| |||||||| ||||||||| |||||||||| |||  |||||||| ||||||||| |||| ||||||||||    
T  10624826 taaattatttttgtttaataatgtaaagatagtgggatatatttaagtacttttaattggagttcttattagtatattctcattggagt 10624914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 27559033 - 27559125
Alignment:
Q  10 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||||||||| | |||| ||| ||||||||||||   |||||||||||||| |||| || ||||||||| ||||||| ||||||||||    
T  27559033 taataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattaatgtattgccattggagtc 27559125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 28967689 - 28967600
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||||||| | ||||||||||||| || ||| |  |||||||||| ||| |||||||||| |||||| | ||||||||||||||||    
T  28967689 taaattatttttgtttaatgatgtaaagataatggaacatatttaagtacttttcattggagtcattattactttattgtcattggagtc 28967600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 37847690 - 37847766
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgt 87  Q
    |||||||||||||| | ||| |||||||||| |||| |  ||||||||||||||| |||| ||||||||||||||||    
T  37847690 aataaattatttttgtttaaagatgtaaagtaagtgtggcctatttaagtatttttcattagagtccttattagtgt 37847766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 3703580 - 3703501
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 90  Q
    |||||||||||||| | |||||||||||||||||||||| |||| |||||| |||  |||| | ||||||||| ||||||    
T  3703580 aataaattatttttgtttaatgatgtaaagttagtgggacctatataagtactttttattgtaatccttattaatgtatt 3703501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 12671787 - 12671878
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||| | |||| |||||| ||||||||||||| |||   |||||| |||||| ||||||||||  |||||||||||||||||| |||||    
T  12671787 aataaatgacttttgtataataatgtaaagttagtaggactcatttaaatatttttcattggagtctgtattagtgtattgtcatttgagtc 12671878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 12863671 - 12863601
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttatta 83  Q
    |||||||||||| | ||| ||| ||||||||||||| |||||||||||||||| |||||  ||||||||||    
T  12863671 taaattatttttgtttaacgatataaagttagtggggtctatttaagtatttttcattgatgtccttatta 12863601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 11916247 - 11916161
Alignment:
Q  38 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtcgagtctttaatagctactttcatt 126  Q
    ||||||||| || |||||||||||||||  ||| ||||| |||||||||||||| |||| |||||  ||| ||||||| ||||||||||    
T  11916247 aagttagtgtgagctatttaagtatttttaatttgagtctttattagtgtattgacattagagtc--gtccttaataggtactttcatt 11916161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 12184735 - 12184823
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    |||||||| ||| | ||||||||||||| ||||||||  |||||||||| ||| ||||| | |  |||||||||||||||||||||||||    
T  12184735 taaattatatttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattgaaat-tttattagtgtattgtcattggagtc 12184823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 213
Target Start/End: Original strand, 39446348 - 39446521
Alignment:
Q  38 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcattnnnnnnnn 134  Q
    |||||||||| |  |||||||||| |||  |||||||||||||  ||||||||||||||||||||   ||||| ||||||  || |||||||            
T  39446348 aagttagtggaacatatttaagtacttttaattggagtcctta--agtgtattgtcattggagtcattgagtccttaataagtattttcatt---aaaaa 39446442  T
Q  135 nttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaag 213  Q
     ||||||||||||||||| |||| || | ||||||||||| ||||  ||||| |  ||||||||  |||||||||||||    
T  39446443 attataaataagtgatgtgtacacgtgtagtccatttaagtagtccatattactgtactaccatcgtggatgctctaag 39446521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 27957540 - 27957582
Alignment:
Q  1 caaaagaagtaataaattatttttatataatgatgtaaagtta 43  Q
    |||||||| ||||||||||||||| || |||||||||||||||    
T  27957540 caaaagaaataataaattatttttgtaaaatgatgtaaagtta 27957582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 31066423 - 31066332
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||| |||| ||||||||||||||||||||||||  |||||||||||||| ||||||| ||| |||||||||||||||||| |||||    
T  31066423 aataaattacttttgtataatgatgtaaagttagtgggacatatttaagtatttttcattggaatccatattagtgtattgtcattagagtc 31066332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 4898182 - 4898278
Alignment:
Q  2 aaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagt-ccttattagtgtattgtcattg 97  Q
    ||||||||||||||||||||||| |||||| |||||||| ||||| ||  |||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  4898182 aaaagaagtaataaattatttttgtataataatgtaaagctagtgagacttatttaagtacttttcattggagtcccttattagtgtattgtcattg 4898278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 565353 - 565443
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 101  Q
    |||||||||||||| ||||||||| |||| ||||||| |  |||||||||| ||| || ||||||||||||||||||||||||||||||||    
T  565353 aataaattatttttttataatgatctaaatttagtggaacatatttaagtacttttcaatggagtccttattagtgtattgtcattggagt 565443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 31046481 - 31046367
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 107  Q
    ||||||||| |||| |||||||||||||||||||| |||  ||||||||||||||  |||| | ||| ||||||||||||||| || |||||   |||||    
T  31046481 aataaattacttttgtataatgatgtaaagttagtcggacatatttaagtattttttattgaaatccatattagtgtattgtctttagagtcattgagtc 31046382  T
Q  108 tttaatagctacttt 122  Q
     ||||||| ||||||    
T  31046381 cttaatagatacttt 31046367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 4396221 - 4396312
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||| |||| ||||||||||||||||||||| |  ||||||||||||||| ||||  ||||||| ||||| || || ||||||||||    
T  4396221 aataaattacttttttataatgatgtaaagttagtgtggcctatttaagtatttttcattaaagtccttgttagtatactgccattggagtc 4396312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 4740408 - 4740334
Alignment:
Q  136 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctct 210  Q
    ||||||||||||||||| ||||  |  ||||||||||| |||| ||||||||| |||||||||||||||||||||    
T  4740408 ttataaataagtgatgtgtacacatgaggtccatttaaaaagtttctattagtggactaccattatggatgctct 4740334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 8517016 - 8516926
Alignment:
Q  12 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 102  Q
    ||||||||||||| | ||||||||||||| |||||| |  ||||||||||||||  |||||||| | | |||||||||||||||| |||||    
T  8517016 ataaattatttttgtttaatgatgtaaagatagtggaacatatttaagtattttttattggagttcatgttagtgtattgtcattagagtc 8516926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 15958789 - 15958740
Alignment:
Q  52 tatttaagtattttccattggagtccttattagtgtattgtcattggagt 101  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  15958789 tatttaagtacttttcattggagtccttattagtgtattgtcattggagt 15958740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 12883274 - 12883183
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta-ttgtcattggagtc 102  Q
    ||||||||||||||   ||||||| |||||| |||||| | |||||||||| ||| ||||||||| |||||||||||| || |||||||||||    
T  12883274 aataaattatttttgcttaatgatataaagtaagtggggtatatttaagtacttttcattggagt-cttattagtgtacttctcattggagtc 12883183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 30313056 - 30312968
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattgga 99  Q
    |||||||||||||| | ||||||||||||||||||| || ||  |||| |||||| ||||||||||  ||||||| ||||  |||||||    
T  30313056 aataaattatttttgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtctatattagtatatttccattgga 30312968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 30350476 - 30350411
Alignment:
Q  11 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 76  Q
    |||||||||||||| | ||||||||||||||||||| || ||  |||| |||||| ||||||||||    
T  30350476 aataaattatttttgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 30350411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 2553196 - 2553270
Alignment:
Q  14 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 88  Q
    |||||||||||   |||||||||||||||||||  || |||||||||| ||| || || | ||||||||||||||    
T  2553196 aaattatttttggttaatgatgtaaagttagtgaaatatatttaagtacttttcactgaaatccttattagtgta 2553270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0568 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 833 - 726
Alignment:
Q  18 tatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaata 114  Q
    ||||||| | ||||||||||||| |||||||  ||||||||||| ||| |||| ||||||||||||||||| |   |||||||||   ||||| ||||||    
T  833 tatttttgtttaatgatgtaaagatagtggggcctatttaagtacttttcatttgagtccttattagtgtactcctattggagtcattgagtccttaata 734  T
Q  115 gctacttt 122  Q
    ||||||||    
T  733 gctacttt 726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 33317 - 33242
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 88  Q
    |||||||||||||| ||||||||||||| ||||| || ||||||||||| ||| ||||| ||||||| | ||||||    
T  33317 taaattatttttatttaatgatgtaaagatagtgagacctatttaagtacttttcattgaagtccttgtaagtgta 33242  T

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Target: scaffold0020 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 11567 - 11490
Alignment:
Q  13 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 90  Q
    |||||||||||| | ||||||||||||| |  |||||  |||||||||| ||| |||| |||||||||||||| ||||    
T  11567 taaattatttttgtttaatgatgtaaagattatgggacatatttaagtacttttcatttgagtccttattagtatatt 11490  T

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