View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10970_high_35 (Length: 236)

Name: NF10970_high_35
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10970_high_35
NF10970_high_35
[»] chr1 (23 HSPs)
chr1 (36-217)||(46688719-46688898)
chr1 (42-217)||(28522845-28523020)
chr1 (137-217)||(5939771-5939851)
chr1 (36-165)||(30627094-30627223)
chr1 (36-165)||(49650119-49650248)
chr1 (36-210)||(26991735-26991914)
chr1 (35-165)||(45467942-45468072)
chr1 (111-217)||(50011710-50011821)
chr1 (36-167)||(27163014-27163145)
chr1 (36-126)||(13003806-13003896)
chr1 (68-126)||(39092981-39093039)
chr1 (36-167)||(23082429-23082560)
chr1 (36-215)||(35718796-35718980)
chr1 (36-168)||(38790539-38790671)
chr1 (167-205)||(6596805-6596843)
chr1 (68-126)||(50011638-50011696)
chr1 (165-217)||(15456826-15456878)
chr1 (36-167)||(18898111-18898247)
chr1 (164-216)||(18898275-18898327)
chr1 (73-167)||(2356231-2356326)
chr1 (36-167)||(6597462-6597593)
chr1 (36-86)||(10472418-10472468)
chr1 (164-216)||(31437064-31437116)
[»] chr7 (21 HSPs)
chr7 (36-217)||(17503205-17503386)
chr7 (36-217)||(17549828-17550009)
chr7 (43-217)||(19735584-19735758)
chr7 (36-168)||(1837760-1837892)
chr7 (36-164)||(38974773-38974900)
chr7 (36-165)||(584070-584199)
chr7 (44-164)||(8515514-8515634)
chr7 (36-210)||(2842512-2842691)
chr7 (36-126)||(48558000-48558090)
chr7 (44-164)||(8488681-8488801)
chr7 (36-167)||(25173480-25173611)
chr7 (99-193)||(1964224-1964318)
chr7 (36-167)||(27399762-27399893)
chr7 (36-165)||(44592100-44592229)
chr7 (36-167)||(48294001-48294132)
chr7 (36-100)||(43788594-43788658)
chr7 (36-167)||(8055265-8055396)
chr7 (71-186)||(8352634-8352748)
chr7 (36-167)||(48767846-48767977)
chr7 (44-167)||(21294841-21294965)
chr7 (39-84)||(1964190-1964235)
[»] chr6 (7 HSPs)
chr6 (36-217)||(27753070-27753251)
chr6 (36-217)||(29465258-29465439)
chr6 (76-217)||(31766425-31766565)
chr6 (71-167)||(6812053-6812149)
chr6 (36-127)||(17095983-17096074)
chr6 (36-168)||(12919069-12919201)
chr6 (164-204)||(5693710-5693750)
[»] chr3 (23 HSPs)
chr3 (36-217)||(25701516-25701697)
chr3 (36-167)||(1151556-1151687)
chr3 (36-168)||(23059103-23059235)
chr3 (73-217)||(47142707-47142851)
chr3 (40-167)||(31833957-31834084)
chr3 (43-128)||(48098382-48098467)
chr3 (36-167)||(1559549-1559680)
chr3 (36-167)||(32552306-32552437)
chr3 (38-165)||(55222401-55222528)
chr3 (36-122)||(1294572-1294658)
chr3 (43-165)||(19611149-19611271)
chr3 (36-116)||(5992162-5992242)
chr3 (36-128)||(38585976-38586068)
chr3 (81-166)||(14903368-14903453)
chr3 (103-211)||(40242607-40242716)
chr3 (71-126)||(30732965-30733020)
chr3 (159-217)||(1559900-1559958)
chr3 (137-182)||(7325588-7325633)
chr3 (61-126)||(13778221-13778286)
chr3 (43-100)||(40243110-40243167)
chr3 (44-177)||(46981819-46981952)
chr3 (137-217)||(32721919-32721999)
chr3 (43-148)||(28131344-28131449)
[»] chr2 (19 HSPs)
chr2 (71-211)||(25749875-25750014)
chr2 (36-167)||(21848188-21848319)
chr2 (36-167)||(3703449-3703580)
chr2 (36-167)||(37847690-37847821)
chr2 (137-217)||(27957500-27957580)
chr2 (61-165)||(28967585-28967689)
chr2 (36-167)||(2968815-2968946)
chr2 (73-168)||(27559033-27559128)
chr2 (159-217)||(39446250-39446308)
chr2 (76-217)||(42029584-42029724)
chr2 (73-168)||(37456044-37456139)
chr2 (36-100)||(36750938-36751002)
chr2 (36-126)||(39446362-39446450)
chr2 (41-167)||(12671787-12671913)
chr2 (36-148)||(44059283-44059396)
chr2 (36-165)||(10624826-10624955)
chr2 (36-165)||(12863542-12863671)
chr2 (61-106)||(22558494-22558539)
chr2 (164-217)||(37847349-37847402)
[»] chr8 (16 HSPs)
chr8 (36-167)||(7177021-7177152)
chr8 (36-164)||(12795901-12796029)
chr8 (36-126)||(5423517-5423607)
chr8 (61-167)||(22800561-22800667)
chr8 (36-165)||(14523131-14523260)
chr8 (73-165)||(1581489-1581581)
chr8 (36-165)||(12532288-12532417)
chr8 (164-208)||(12796294-12796338)
chr8 (164-217)||(7177375-7177428)
chr8 (39-166)||(13282128-13282258)
chr8 (36-84)||(41438497-41438545)
chr8 (36-167)||(8692992-8693123)
chr8 (68-167)||(11989709-11989808)
chr8 (36-86)||(43976697-43976747)
chr8 (167-217)||(45251232-45251282)
chr8 (164-217)||(13282044-13282097)
[»] chr4 (24 HSPs)
chr4 (36-167)||(38068088-38068219)
chr4 (36-217)||(37450771-37450952)
chr4 (36-168)||(13678583-13678715)
chr4 (36-166)||(38168097-38168227)
chr4 (36-211)||(4711546-4711717)
chr4 (38-210)||(44991729-44991906)
chr4 (90-167)||(19853994-19854071)
chr4 (38-167)||(27064416-27064545)
chr4 (36-165)||(51175526-51175655)
chr4 (44-217)||(56397059-56397232)
chr4 (36-167)||(36904174-36904305)
chr4 (36-160)||(17058776-17058900)
chr4 (36-126)||(39720249-39720339)
chr4 (43-165)||(12191524-12191647)
chr4 (44-167)||(27085527-27085649)
chr4 (73-168)||(5744801-5744896)
chr4 (95-168)||(13665785-13665858)
chr4 (45-126)||(38068554-38068635)
chr4 (81-168)||(30482923-30483010)
chr4 (137-216)||(49551792-49551871)
chr4 (36-86)||(32409573-32409623)
chr4 (44-126)||(45832099-45832181)
chr4 (45-167)||(56228173-56228294)
chr4 (164-217)||(19853129-19853182)
[»] chr5 (12 HSPs)
chr5 (36-167)||(31066292-31066423)
chr5 (81-202)||(4898156-4898278)
chr5 (36-167)||(31046350-31046481)
chr5 (36-166)||(8516886-8517016)
chr5 (38-167)||(12883145-12883274)
chr5 (36-126)||(15958699-15958789)
chr5 (40-167)||(565353-565480)
chr5 (36-167)||(4396221-4396351)
chr5 (36-99)||(31051411-31051474)
chr5 (164-217)||(12883523-12883576)
chr5 (36-83)||(42075998-42076045)
chr5 (36-86)||(1922930-1922980)
[»] scaffold0568 (1 HSPs)
scaffold0568 (36-160)||(709-833)
[»] scaffold0528 (1 HSPs)
scaffold0528 (36-99)||(1467-1530)
[»] scaffold0110 (2 HSPs)
scaffold0110 (76-176)||(13663-13764)
scaffold0110 (76-176)||(21400-21501)
[»] scaffold0020 (1 HSPs)
scaffold0020 (36-165)||(11439-11567)
[»] scaffold0007 (1 HSPs)
scaffold0007 (164-217)||(175301-175354)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 46688719 - 46688898
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| |||||     
T  46688719 tttataattttttaataaaagtatctattaatgattcaatgactccaatgacaatacactaataatgactccaatgaaaagtacttaaatagg-cccact 46688817  T
Q  136 cactttacatcatcatacaaaaataatttattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
     |||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||    
T  46688818 aactttacatcattatacaaaaataatttattacttcttttgcaagtaggaccaaccagtacata-tttattacttctttta 46688898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 28522845 - 28523020
Alignment:
Q  42 attttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccacttt 141  Q
    ||||||||||||| |||  |||||| || ||||||||||||||||||||||| |||||| |||||||||  |||||  ||||||||||| ||   |||||    
T  28522845 attttttaataaaagtacatattaaggactcaatgactccaatgacaatacactaataaggactctaatgcaaagtttttaaataggccacattaacttt 28522944  T
Q  142 acatcatcatacaaaaataatttattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    | ||||| || |||||||||||||||||||||||||||||||  |||||  ||||||||||||||||||| |||||    
T  28522945 atatcattatgcaaaaataatttattacttcttttgcaagtgatatcaattagtacatattttattacttctttta 28523020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 5939851 - 5939771
Alignment:
Q  137 actttacatcatcatacaaaaataatttattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||    
T  5939851 actttacatcattatacaaaaataatttattacttcttctgcaagtgggaccaaccagtacatattttattacttctttta 5939771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 30627094 - 30627223
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||||||||||||||| |||  |||||| || | |||||||||||||||||||||||||||| ||||| ||| |||| |||||||||| | |||||     
T  30627094 tttataattttttaataaaagtacctattaaggacttaatgactccaatgacaatacattaataaagactcaaatgaaaaatacttaaatatgtcccact 30627193  T
Q  136 cactttacatcatcatacaaaaataattta 165  Q
      ||||||||||| | ||||||||||||||    
T  30627194 atctttacatcattaaacaaaaataattta 30627223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 49650248 - 49650119
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||||||||||||||| |||  |||||| || |||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||| | | |||     
T  49650248 tttataattttttaataaaagtacttattaaggactcaatgactccaataacaatacattaataaggactccaatgaaaagtacttaaatatgtctcact 49650149  T
Q  136 cactttacatcatcatacaaaaataattta 165  Q
      ||||||||||| | ||||||||||||||    
T  49650148 atctttacatcattaaacaaaaataattta 49650119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 210
Target Start/End: Original strand, 26991735 - 26991914
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||||||||||||||| |||   ||||| || |||||||||||||| |||||||| |||||| ||||| ||| ||||||||||||||| | | |||     
T  26991735 tttataattttttaataaaagtacccattaaggactcaatgactccaataacaatacactaataaggactccaatgaaaagtacttaaatatgtctcact 26991834  T
Q  136 cactttacatcatcatacaaaaataattta----ttacttcttttg-caagtgggatcaaccagtacatattttattact 210  Q
      ||||||||||| | ||||||||||||||    ||||| |||||  ||||||||| |||  |||||| |||||||||||    
T  26991835 atctttacatcattaaacaaaaataatttacatattactcctttttacaagtgggaccaagtagtacacattttattact 26991914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 165
Target Start/End: Original strand, 45467942 - 45468072
Alignment:
Q  35 gtttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccac 134  Q
    |||||||| ||||||||||| |||  |||||| |||| ||||||||||||||||||||| | |||||||||| ||| |||| || ||||||| | |||||    
T  45467942 gtttataaatttttaataaaagtacctattaaggatttaatgactccaatgacaatacactgataatgactccaatgaaaaatatttaaatatgtcccac 45468041  T
Q  135 ccactttacatcatcatacaaaaataattta 165  Q
       ||||||||||| | ||||||||||||||    
T  45468042 tatctttacatcattaaacaaaaataattta 45468072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 50011710 - 50011821
Alignment:
Q  111 aaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttattacttcttttgcaagtgggatc-----aaccagtacatatttta 205  Q
    |||||||| |||||||  |||| |  |||||||||||| ||||||||||||||||||||||||||||||||||| | |     |||||||||||||||||    
T  50011710 aaaaagtatttaaatataccccgctaactttacatcattatacaaaaataatttattacttcttttgcaagtggtaccaaccaaaccagtacatatttta 50011809  T
Q  206 ttacttatttta 217  Q
    |||||| |||||    
T  50011810 ttacttctttta 50011821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 27163014 - 27163145
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||||||| ||||||| ||   ||||||||||||| ||||||||||||||||||| ||| |  ||||| ||| |||| | ||||||||||   |||     
T  27163014 tttataattttgtaataaatgttcatattaatgattcactgactccaatgacaatacactaacagagactccaatgaaaaatgcttaaataggtgacact 27163113  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     ||||||||| || |||||||| |||||||||    
T  27163114 aactttacataattatacaaaagtaatttatt 27163145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 13003806 - 13003896
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaata 126  Q
    |||||||| |||||||||| |||  |||||| ||||||||| ||||||||  | |||| |||||| ||||| |||||||||||||||||||    
T  13003806 tttataatattttaataaaagtacctattaaggattcaatggctccaatgggagtacactaataaggactccaataaaaagtacttaaata 13003896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 126
Target Start/End: Complemental strand, 39093039 - 39092981
Alignment:
Q  68 gattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaata 126  Q
    |||||||||||||||||||||||||| |||||| ||||| ||| |||||||||||||||    
T  39093039 gattcaatgactccaatgacaatacaataataaggactccaattaaaagtacttaaata 39092981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 23082560 - 23082429
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| |||||||||| |||  ||| || ||||||||| ||||||||  | |||| |||||| ||||| ||| |||| ||||||||||| |  |||     
T  23082560 tttataatattttaataaaagtacttatcaaggattcaatggctccaatgggagtacactaataaggactccaatgaaaaatacttaaatagacttcact 23082461  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||| ||| | ||||||||||||||||    
T  23082460 aactttacaacattaaacaaaaataatttatt 23082429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 215
Target Start/End: Original strand, 35718796 - 35718980
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||||||||||||||  ||| |||||| || | ||||||||||||| ||||||| ||| || ||| | ||| ||||||||||||||| | | |||     
T  35718796 tttataattttttaataaaaatatctattaaggacttaatgactccaatggcaatacactaacaaggaccccaatgaaaagtacttaaatatgtctcact 35718895  T
Q  136 cactttacatcatcatacaaaaataat----ttattact-tcttttgcaagtgggatcaaccagtacatattttattacttattt 215  Q
      |||||| | || | |||||||||||    |||||||| | |||| ||||||||| |||  |||||| ||||||||||| ||||    
T  35718896 atctttactttattaaacaaaaataatttacttattactcttttttacaagtgggaccaagtagtacacattttattactcattt 35718980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 168
Target Start/End: Original strand, 38790539 - 38790671
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||| |||||||||||| || | |||||| |||||||| |||||||||  |||||| ||  |  ||||| ||| |||| | |||||||| | | |||     
T  38790539 tttatatttttttaataaaagtttatattaaagattcaataactccaatggaaatacagtaccagagactccaatgaaaaatgcttaaataagtctcact 38790638  T
Q  136 cactttacatcatcatacaaaaataatttatta 168  Q
     |||||||||||| |||||||| ||||||||||    
T  38790639 aactttacatcattatacaaaagtaatttatta 38790671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 6596843 - 6596805
Alignment:
Q  167 tacttcttttgcaagtgggatcaaccagtacatatttta 205  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  6596843 tacttcttttgcaagtgggatcaactagtacatatttta 6596805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 50011638 - 50011696
Alignment:
Q  68 gattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaata 126  Q
    |||||||| ||||||||||||||||| |||||| ||||| ||| ||||||| |||||||    
T  50011638 gattcaataactccaatgacaatacaataataaggactccaatcaaaagtatttaaata 50011696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 15456878 - 15456826
Alignment:
Q  165 attacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    ||||| |||||||||||||||| |||| | ||||||||||||||||| |||||    
T  15456878 attacctcttttgcaagtgggaccaactaatacatattttattacttctttta 15456826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 18898111 - 18898247
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatg-----actccaatgacaatacattaataatgactctaataaaaagtacttaaataggcc 130  Q
    ||||||||||||||||||| |||| | |||| || ||||||     ||| |||||  ||||||||||||   ||||||| |||||||||||| ||| | |    
T  18898111 tttataattttttaataaaagtatatgttaaagactcaatgcaatgacttcaatggtaatacattaatatatactctaacaaaaagtacttacataagtc 18898210  T
Q  131 ccacccactttacatcatcatacaaaaataatttatt 167  Q
    ||||  |||||| ||||| ||||||||  ||||||||    
T  18898211 ccactaactttatatcattatacaaaagcaatttatt 18898247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 18898275 - 18898327
Alignment:
Q  164 tattacttcttttgcaagtgggatcaaccagtacatattttattacttatttt 216  Q
    |||||||| ||||| |||||||||||||  |||||||||||||||||| ||||    
T  18898275 tattacttattttgaaagtgggatcaacttgtacatattttattacttctttt 18898327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 2356326 - 2356231
Alignment:
Q  73 aatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcata-caaaaataatttatt 167  Q
    |||||||||||| |||||||||||||   ||||| ||||||||||| ||||| ||   ||||  |||||||||||| |||  ||||||||||||||    
T  2356326 aatgactccaataacaatacattaattgagactccaataaaaagtatttaaaaagattccactgactttacatcattatataaaaaataatttatt 2356231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 6597593 - 6597462
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| ||||||||||  |   |||||| || |||||||||||||||||| |||| ||| || ||||| ||| || | || |||||||||   |||     
T  6597593 tttataatattttaataaaaattcttattaaggactcaatgactccaatgacagtacactaacaaggactccaatgaataatatttaaataggttacact 6597494  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||||||| |||||||| | |||||||    
T  6597493 aactttacatcattatacaaaagtgatttatt 6597462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 10472418 - 10472468
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatga 86  Q
    ||||||||||||||||||| ||   |||||||||| |||||||||||||||    
T  10472418 tttataattttttaataaacgttcttattaatgatccaatgactccaatga 10472468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 31437116 - 31437064
Alignment:
Q  164 tattacttcttttgcaagtgggatcaaccagtacatattttattacttatttt 216  Q
    |||||||||||||| |||| ||| ||||   ||||||||||||||||||||||    
T  31437116 tattacttcttttgaaagtaggaccaacttatacatattttattacttatttt 31437064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 9e-51; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 17503205 - 17503386
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||||||||||| ||  ||  |||||| |||||||||||||||||||||||||| |||||| ||||| |||||||| |||||||||| | ||||      
T  17503205 tttataattttttaatgaaattacatattaaggattcaatgactccaatgacaatacactaataaggactccaataaaaaatacttaaataagtcccagt 17503304  T
Q  136 cactttacatcatcatacaaaaataatttattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
     ||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||    
T  17503305 aactttacataattatacaaaaataatttattacttcttttgcaagtgggaccaaccagtacatagtttattacttctttta 17503386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 17550009 - 17549828
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||||||||||| ||  ||  |||||| |||||||||||||||||||||||||| |||||| ||||| |||||||| |||||||||| | ||||      
T  17550009 tttataattttttaatgaaattacatattaaggattcaatgactccaatgacaatacactaataaggactccaataaaaaatacttaaataagtcccagt 17549910  T
Q  136 cactttacatcatcatacaaaaataatttattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
     ||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||    
T  17549909 aactttacataattatacaaaaataatttattacttcttttgcaagtgggaccaaccagtacatagtttattacttctttta 17549828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 43 - 217
Target Start/End: Complemental strand, 19735758 - 19735584
Alignment:
Q  43 ttttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccacttta 142  Q
    |||||||||||| |||  |||||| || | |||| || |||| |||| | |||||||| || || ||||||||||||||||||||| | |||  ||||||    
T  19735758 ttttttaataaaagtacatattaaggacttaatgtcttcaataacaagaaattaataaggaatccaataaaaagtacttaaataggtctcactaacttta 19735659  T
Q  143 catcatcatacaaaaataatttattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
     ||||| ||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||| |||||    
T  19735658 tatcattatacaaaaataatttattacttcttttacaagtgagaccaaccagtacatattttattacttctttta 19735584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 168
Target Start/End: Complemental strand, 1837892 - 1837760
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| | |||||||| |||  |||||| || ||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| |||||||     
T  1837892 tttataatatattaataaaagtacttattaaagactcaatgactccaatgacaatacactaataaggactcaaataaaaagtacttaaatatgccccact 1837793  T
Q  136 cactttacatcatcatacaaaaataatttatta 168  Q
     ||||| |||||| | |||||| ||||||||||    
T  1837792 aactttgcatcattaaacaaaagtaatttatta 1837760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 164
Target Start/End: Original strand, 38974773 - 38974900
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| |||||||||| |||| |||||| ||||||||||||||||||| | |||| |||||| ||||||||  |||||||||||||||||||||||     
T  38974773 tttataatattttaataaaagtatctattaaggattcaatgactccaatgagagtacactaataaggactctaaagaaaagtacttaaataggccccact 38974872  T
Q  136 cactttacatcatcatacaaaaataattt 164  Q
     || ||||||||| | |||||||||||||    
T  38974873 aac-ttacatcattaaacaaaaataattt 38974900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 584199 - 584070
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||||||||||||||| |||| |||||| || ||||||||||||||| ||||||| ||| || ||||| ||| ||||||||||||||| | | |||     
T  584199 tttataattttttaataaaagtatctattaaggactcaatgactccaatggcaatacactaacaaagactccaatgaaaagtacttaaatatgtctcact 584100  T
Q  136 cactttacatcatcatacaaaaataattta 165  Q
      ||||||||||| | ||||||||||||||    
T  584099 atctttacatcattaaacaaaaataattta 584070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 8515514 - 8515634
Alignment:
Q  44 tttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttac 143  Q
    ||||||||||| |||  |||||| |||||||||||||||||| ||||||| |||||| ||||| |||||||| |||||||||| | |||||   ||||||    
T  8515514 tttttaataaaagtacctattaaggattcaatgactccaatggcaatacactaataaggactcgaataaaaaatacttaaatatgtcccactgtctttac 8515613  T
Q  144 atcatcatacaaaaataattt 164  Q
    ||||| | |||||||||||||    
T  8515614 atcattaaacaaaaataattt 8515634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 210
Target Start/End: Complemental strand, 2842691 - 2842512
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| |||||||||| |||  |||||| || ||||||||||||||||||||||| |||||| ||||| ||| |||| || ||||||| | |||||     
T  2842691 tttataatattttaataaaagtacatattaaggactcaatgactccaatgacaatacactaataaggactccaatgaaaaatatttaaatatgtcccact 2842592  T
Q  136 cactttacatcatcatacaaaaataattta----ttacttcttttg-caagtgggatcaaccagtacatattttattact 210  Q
      || |||||||| | ||||||||||||||    |||||| ||||  |||||||||||||  |||||| |||||||||||    
T  2842591 atctgtacatcattaaacaaaaataatttacatattacttatttttacaagtgggatcaagtagtacacattttattact 2842512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 48558090 - 48558000
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaata 126  Q
    |||||||||||||||||||  ||| |||||| || |||||||||||||||| |||||||||||||||| || ||| |||||||||||||||    
T  48558090 tttataattttttaataaaaatatttattaaggactcaatgactccaatgagaatacattaataatgagtccaatgaaaagtacttaaata 48558000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 8488681 - 8488801
Alignment:
Q  44 tttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttac 143  Q
    ||||||||||| |||  |||||| |||||||||||||||||| ||||||| |||||| ||||  |||||||| |||||||||| | |||||   ||||||    
T  8488681 tttttaataaaagtacctattaaggattcaatgactccaatggcaatacactaataaggacttcaataaaaaatacttaaatatgtcccactatctttac 8488780  T
Q  144 atcatcatacaaaaataattt 164  Q
    ||||| | |||||||||||||    
T  8488781 atcattaaacaaaaataattt 8488801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 25173611 - 25173480
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||||| |||||||||  ||| |||||| || |||||  |||||||||||||||| ||| | |||||| ||| ||||||||||||||||| | |||     
T  25173611 tttataattatttaataaaaatatttattaaggactcaatatctccaatgacaatacactaacagtgactcaaatgaaaagtacttaaataggtctcact 25173512  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     | |||||||||| |||||||| |||||||||    
T  25173511 aattttacatcattatacaaaagtaatttatt 25173480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 1964224 - 1964318
Alignment:
Q  99 aatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttattacttcttttgcaagtgggatcaacca 193  Q
    |||||||| ||||||||||| ||||||||  |||||  |||||||||||| ||| ||||||||||||||||||||||| |||||| || ||||||    
T  1964224 aatgactccaataaaaagtatttaaatagatcccactaactttacatcattatataaaaataatttattacttcttttacaagtgtgaccaacca 1964318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 27399893 - 27399762
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||||||||||||||  |   |||||| || ||||||||||||||||||||||| ||| | |||||| ||| ||||||| |||||||||  ||||     
T  27399893 tttataattttttaataaaaattcttattaaggactcaatgactccaatgacaatacactaacattgactccaatgaaaagtaattaaataggttccact 27399794  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
      ||||||||||| || ||||| |||||||||    
T  27399793 acctttacatcattatgcaaaagtaatttatt 27399762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 44592229 - 44592100
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||| ||||||||||| |||  ||||||  | || ||||||||||| |||||||| |||||| ||||||||| ||||||||||||||| | ||||      
T  44592229 tttataagtttttaataaaagtacctattaagaactcgatgactccaataacaatacactaataaggactctaatgaaaagtacttaaatatgtcccatt 44592130  T
Q  136 cactttacatcatcatacaaaaataattta 165  Q
      ||||||||||| | |||| |||||||||    
T  44592129 atctttacatcattaaacaacaataattta 44592100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 48294001 - 48294132
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| |||||||||| |||  |||||| || ||| |||||||||||  | |||| |||||| ||||| |||  ||||||  |||||||| |||||     
T  48294001 tttataatattttaataaaagtacatattaaagactcattgactccaatggaagtacactaataaggactccaatgtaaagtatctaaataggtcccact 48294100  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||||||| | ||||||||||||||||    
T  48294101 aactttacatcattaaacaaaaataatttatt 48294132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 43788658 - 43788594
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataa 100  Q
    ||||||||||||||||||| |||  |||||| || ||||||||||||||| ||||||| ||||||    
T  43788658 tttataattttttaataaaagtacctattaaggactcaatgactccaatggcaatacactaataa 43788594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 8055265 - 8055396
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||||||||||||||  |   |||||| |  ||||||||||||||||||||||| ||| || || | | |||||||||  ||||||||| | |||     
T  8055265 tttataattttttaataaaaattcctattaagggctcaatgactccaatgacaatacactaacaaggaatatgataaaaagtgattaaataggtctcact 8055364  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||||||| | | |||| |||||||||    
T  8055365 aactttacatcattacataaaagtaatttatt 8055396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 8352748 - 8352634
Alignment:
Q  71 tcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttattact 170  Q
    ||||| ||| ||||||||||||| |||||| ||||  ||| |||| |||||||||| | | |||  |||||||||||| | | ||||| || ||||||||    
T  8352748 tcaataacttcaatgacaatacactaataaggacttcaatgaaaaatacttaaataagtctcactaactttacatcatta-aaaaaaaaaaattattact 8352650  T
Q  171 tcttttgcaagtggga 186  Q
    ||||||| || |||||    
T  8352649 tcttttgaaaatggga 8352634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 48767977 - 48767846
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||||||||||| || ||   |||||| || |||||||||||||||  ||||||  || |  ||||| ||| |||||| |||||||| | | |||     
T  48767977 tttataattttttaatgaaagttcctattaaggactcaatgactccaatggtaatacaccaacagggactccaatgaaaagtgcttaaatatgtctcact 48767878  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||||||| |||||||| |||| ||||    
T  48767877 aactttacatcattatacaaaagtaatatatt 48767846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 21294965 - 21294841
Alignment:
Q  44 tttttaataaaggtatgtattaatgattcaatgactccaatgacaata--cattaataatgactctaataaaaagtacttaaataggccccacccacttt 141  Q
    |||||||||||| ||| ||||||  | ||||||||||||| |||||||  || |||||| ||||| ||| |||| || ||||||| | || ||  |||||    
T  21294965 tttttaataaag-tatttattaagaactcaatgactccaacgacaatatacactaataaagactccaattaaaaatatttaaatatgtcctactaacttt 21294867  T
Q  142 acatcatcatacaaaaataatttatt 167  Q
    ||||||| | ||| ||||||||||||    
T  21294866 acatcattaaacacaaataatttatt 21294841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 1964190 - 1964235
Alignment:
Q  39 ataattttttaataaaggtatgtattaatgattcaatgactccaat 84  Q
    |||||||||||||||| |||| ||||||  ||||||||||||||||    
T  1964190 ataattttttaataaaagtatatattaagtattcaatgactccaat 1964235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 27753070 - 27753251
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||||||||||||||| |||  |||||| ||||||||||||| |||| ||||||| |||||| ||||| ||| ||||||||||||||| | |||||     
T  27753070 tttataattttttaataaaagtacctattaaggattcaatgactcaaatgtcaatacactaataaggactcaaatgaaaagtacttaaataagtcccact 27753169  T
Q  136 cactttacatcatcatacaaaaataatttattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
     |||||||| ||| | |||||| ||||||||||||||||||||||||| ||||||  ||||||||||||||||||| |||||    
T  27753170 aactttacaacattaaacaaaactaatttattacttcttttgcaagtgagatcaaatagtacatattttattacttctttta 27753251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 29465258 - 29465439
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| ||||||| || || | |||||| || |||||||||| ||||||||| || |||||||||||| ||| |||| | |||||||||  | |||     
T  29465258 tttataatattttaatgaaagtttatattaaggactcaatgactcaaatgacaattcactaataatgactccaatgaaaaattcttaaatagatctcact 29465357  T
Q  136 cactttacatcatcatacaaaaataatttattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
     | |||||||||| |||||||| || ||||||| |||||||| ||||  || ||||||||||||||||||| |||| |||||    
T  29465358 aagtttacatcattatacaaaattagtttattatttcttttgtaagttagaccaaccagtacatattttatcacttctttta 29465439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 217
Target Start/End: Original strand, 31766425 - 31766565
Alignment:
Q  76 gactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttattacttcttt 175  Q
    ||||| |||||||||||| |||||| ||||| |||||| |||||||||||||  |||||  ||||||||| || |||||||||| |||||| |||| |||    
T  31766425 gactcaaatgacaatacactaataa-gactccaataaagagtacttaaatagatcccactaactttacattattatacaaaaattatttataacttattt 31766523  T
Q  176 tgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    || ||||| ||  |||| |||||||||||||||||| |||||    
T  31766524 tgtaagtgagactaacccgtacatattttattacttctttta 31766565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 6812149 - 6812053
Alignment:
Q  71 tcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttatt 167  Q
    ||||||||||||||| ||||||| |||||| ||||| ||| |||||||||||||||||  ||||  |||||||||||| ||||||||||||||||||    
T  6812149 tcaatgactccaatggcaatacactaataaagactccaatgaaaagtacttaaataggttccactaactttacatcattatacaaaaataatttatt 6812053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 17095983 - 17096074
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaatag 127  Q
    ||||||||||||||||||| |||  |||||| ||||| |||||||||||||||||||| |||||| ||||  ||| ||||||||||||||||    
T  17095983 tttataattttttaataaaagtacctattaaggattctatgactccaatgacaatacactaataaggacttcaatgaaaagtacttaaatag 17096074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 168
Target Start/End: Complemental strand, 12919201 - 12919069
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| | |||| ||| |||  |||||| || | ||||||||||||| ||||||| |||||| || || ||| |||| |||||||||| |||||||     
T  12919201 tttataatctattaaaaaaagtacctattaaggacttaatgactccaatggcaatacactaataaggattcaaatgaaaaatacttaaatatgccccact 12919102  T
Q  136 cactttacatcatcatacaaaaataatttatta 168  Q
     ||||| | | || | |||||||||||||||||    
T  12919101 aactttgccttattaaacaaaaataatttatta 12919069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 5693750 - 5693710
Alignment:
Q  164 tattacttcttttgcaagtgggatcaaccagtacatatttt 204  Q
    ||||| |||||||||||||||||||||| |||| |||||||    
T  5693750 tattatttcttttgcaagtgggatcaactagtatatatttt 5693710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 25701516 - 25701697
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||||||||||| || |||  |||||| ||||||| |||||||||||||||||| ||||||  |||  ||| ||||||||||||||| | | ||||    
T  25701516 tttataattttttaatgaaagtacctattaaggattcaaagactccaatgacaatacactaataagaacttcaattaaaagtacttaaataagtctcacc 25701615  T
Q  136 cactttacatcatcatacaaaaataatttattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
     ||||||||| || ||||||||||||||||||| |||||||||||||||||  |||| | |||||||||||||||| |||||    
T  25701616 aactttacattattatacaaaaataatttattatttcttttgcaagtgggacaaaccggaacatattttattacttctttta 25701697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 1151556 - 1151687
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| |||||||||| |||  |||||| || ||||| ||||||||   | |||| |||||| ||||| |||||||||||||||||||||||||||     
T  1151556 tttataatattttaataaaagtacttattaaggactcaataactccaatagaagtacactaataaggactccaataaaaagtacttaaataggccccact 1151655  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||||||| | ||||||||||||||||    
T  1151656 aactttacatcattaaacaaaaataatttatt 1151687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 36 - 168
Target Start/End: Complemental strand, 23059235 - 23059103
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| | |||||||| |||  |||||| || ||||||||||||||| |||| || |||||| ||||| ||| ||||||||||||||| |||||||     
T  23059235 tttataatatattaataaaagtacttattaaagactcaatgactccaatggcaatccactaataaggactcaaatgaaaagtacttaaatatgccccact 23059136  T
Q  136 cactttacatcatcatacaaaaataatttatta 168  Q
     ||||| |||||| | |||||||||||||||||    
T  23059135 aactttgcatcattaaacaaaaataatttatta 23059103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 217
Target Start/End: Complemental strand, 47142851 - 47142707
Alignment:
Q  73 aatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttattacttc 172  Q
    ||||||||||||||||| | | |||||| ||||| ||| |||| |||||||||||| | |||  |||||||||||  | ||||||||||||||||||||     
T  47142851 aatgactccaatgacaagatactaataaggactccaatgaaaactacttaaataggtctcactaactttacatcactaaacaaaaataatttattactta 47142752  T
Q  173 ttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    |||||||||   || |||  ||||||||||||||||||| |||||    
T  47142751 ttttgcaaggaagaccaaatagtacatattttattacttctttta 47142707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 31834084 - 31833957
Alignment:
Q  40 taattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccact 139  Q
    |||| |||||||||| |||| |||||| || |||||||||||||| | | |||| ||||||  ||||||||||||| |||||||||||  |||||  |||    
T  31834084 taatattttaataaaagtatatattaaggactcaatgactccaataaaagtacactaataagaactctaataaaaaatacttaaatagatcccactaact 31833985  T
Q  140 ttacatcatcatacaaaaataatttatt 167  Q
    ||||||||| | ||||||||||||||||    
T  31833984 ttacatcattaaacaaaaataatttatt 31833957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 48098467 - 48098382
Alignment:
Q  43 ttttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaatagg 128  Q
    ||||||||||||  || ||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||| ||||    
T  48098467 ttttttaataaaaatacgtattaaggattcaatgactccaatgacaatacattaataaggactccaataaaaaatacttaattagg 48098382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 1559549 - 1559680
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||||| |||||||||  ||| ||||||  | ||||| ||||||||| ||||||| ||||||  |||||||| |||| |||||||||||| | |||     
T  1559549 tttataattgtttaataaaaatatctattaagaactcaataactccaatgtcaatacactaataagaactctaatgaaaaatacttaaataggtctcact 1559648  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||||||| |||||||||| |||||||    
T  1559649 aactttacatcattatacaaaaattatttatt 1559680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 32552437 - 32552306
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| ||||||||||||||  |||||| || |||||||||||||||| | |||| |||||| ||||| ||| |||| |||||||||||| ||||      
T  32552437 tttataatattttaataaaggtacttattaaggactcaatgactccaatgagagtacactaataaggactccaatgaaaaatacttaaataggtcccatt 32552338  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||||||| | ||||||| || |||||    
T  32552337 aactttacatcattaaacaaaaaaaaattatt 32552306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 165
Target Start/End: Complemental strand, 55222528 - 55222401
Alignment:
Q  38 tataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccaccca 137  Q
    ||||||||||||||||| |||  | |||| || ||||||||||||||||||||||| ||||||  |||| ||| |||| |||||||||| | | |||       
T  55222528 tataattttttaataaaagtacttgttaaggactcaatgactccaatgacaatacactaataaatactccaatgaaaattacttaaatatgtctcactat 55222429  T
Q  138 ctttacatcatcatacaaaaataattta 165  Q
    ||||||||||| | ||||||||||||||    
T  55222428 ctttacatcattaaacaaaaataattta 55222401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 122
Target Start/End: Complemental strand, 1294658 - 1294572
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtactta 122  Q
    ||||||||||||||||||| |||  |||||| || |||||| |||||||||||||||| |||||| ||||| ||| |||||||||||    
T  1294658 tttataattttttaataaaagtacatattaaggactcaatgtctccaatgacaatacactaataaggactccaatgaaaagtactta 1294572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 19611271 - 19611149
Alignment:
Q  43 ttttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccacttta 142  Q
    |||||||||||| |||  |||||| || ||||||||||||||||||||||| ||||||  | |  ||| ||||||||||||||| | |||||   |||||    
T  19611271 ttttttaataaaagtacctattaaggactcaatgactccaatgacaatacactaataagaaattcaatgaaaagtacttaaatatgtcccactatcttta 19611172  T
Q  143 catcatcatacaaaaataattta 165  Q
    |||||| | ||||||||||||||    
T  19611171 catcattaaacaaaaataattta 19611149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 116
Target Start/End: Original strand, 5992162 - 5992242
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaag 116  Q
    ||||||||||||||||||| |||| |||||| || ||||||||| ||||||||||||| |||||| ||||| ||| |||||    
T  5992162 tttataattttttaataaaagtatttattaaggactcaatgacttcaatgacaatacactaataaggactccaatgaaaag 5992242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 36 - 128
Target Start/End: Complemental strand, 38586068 - 38585976
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaatagg 128  Q
    |||||||||||||||| || |||  |||||| || ||||||||||||||||||||||| |||||| ||||| ||| |||  ||||||||||||    
T  38586068 tttataattttttaatgaaagtagctattaaggactcaatgactccaatgacaatacactaataaagactccaatcaaatatacttaaatagg 38585976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 14903453 - 14903368
Alignment:
Q  81 caatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttat 166  Q
    ||||||||||||| |||||||||||| ||| |||||||  |||||| |||||||  ||||| |||||| | |||||||||||||||    
T  14903453 caatgacaatacactaataatgactcaaatgaaaagtatataaatatgccccactaactttgcatcattaaacaaaaataatttat 14903368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 40242716 - 40242607
Alignment:
Q  103 actctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaa-taatttattacttcttttgcaagtgggatcaaccagtacatat 201  Q
    |||||||||||||||||||||||| |    |   ||||||||| || ||||||||| ||||| ||||||||||||| ||||||||| ||  | |||||||    
T  40242716 actctaataaaaagtacttaaatatgttttattaactttacattattatacaaaaaataattaattacttcttttgtaagtgggattaattaatacatat 40242617  T
Q  202 tttattactt 211  Q
    ||||||||||    
T  40242616 tttattactt 40242607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 30732965 - 30733020
Alignment:
Q  71 tcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaata 126  Q
    |||||||||||||||||||||||||||||| || || ||| ||||||| |||||||    
T  30732965 tcaatgactccaatgacaatacattaataaggattccaattaaaagtagttaaata 30733020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 1559900 - 1559958
Alignment:
Q  159 taatttattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    |||| |||||||||| ||||||||| || |||| ||||||||||||||||||| |||||    
T  1559900 taatatattacttctgttgcaagtgtgaccaactagtacatattttattacttttttta 1559958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 7325588 - 7325633
Alignment:
Q  137 actttacatcatcatacaaaaataatttattacttcttttgcaagt 182  Q
    |||||||||||| | ||||||||||||||||||||||||| |||||    
T  7325588 actttacatcattaaacaaaaataatttattacttcttttacaagt 7325633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 13778286 - 13778221
Alignment:
Q  61 tattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaata 126  Q
    |||||| || |||||||||| |||||||||||||||| || ||||| ||| |||||| ||||||||    
T  13778286 tattaaggactcaatgactctaatgacaatacattaacaaagactccaatgaaaagtgcttaaata 13778221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 40243167 - 40243110
Alignment:
Q  43 ttttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataa 100  Q
    ||||||||| || |||| | |||||||||||||||||| |||||||||||| ||||||    
T  40243167 ttttttaatgaaagtatattttaatgattcaatgactctaatgacaatacactaataa 40243110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 177
Target Start/End: Complemental strand, 46981952 - 46981819
Alignment:
Q  44 tttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttac 143  Q
    ||||||||||| |||| ||||||   ||  |||||||||||||||||||| ||||||   ||  | | |||||||  |||||| | | |||  |||||||    
T  46981952 tttttaataaaagtatctattaagagttatatgactccaatgacaatacactaataagagcttcattgaaaagtatctaaataagtctcactaactttac 46981853  T
Q  144 atcatcatacaaaaataatttattacttcttttg 177  Q
    ||||| |||||||| ||||| |||||||||||||    
T  46981852 atcattatacaaaagtaattcattacttcttttg 46981819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 32721919 - 32721999
Alignment:
Q  137 actttacatcatcatacaaaaataatttattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    |||||||||||| || ||||| ||||||||||| ||||||| ||||  || ||||   ||||||||||||||||| |||||    
T  32721919 actttacatcattattcaaaagtaatttattacatcttttgaaagtaagaccaacttatacatattttattacttctttta 32721999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 148
Target Start/End: Complemental strand, 28131449 - 28131344
Alignment:
Q  43 ttttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccacttta 142  Q
    |||||||||||| |||| |||||| ||  | ||||||||||||  |||||| ||| || |||||  ||||||| |||||||||| | | |||  ||||||    
T  28131449 ttttttaataaaagtatctattaaagacccgatgactccaatggtaatacactaacaaggactcccataaaaattacttaaataagtctcactaacttta 28131350  T
Q  143 catcat 148  Q
    ||||||    
T  28131349 catcat 28131344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 25749875 - 25750014
Alignment:
Q  71 tcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttattact 170  Q
    ||||||||||||||| ||||||| ||||||  |||| |  ||||| |||||||||| | |||||  ||||||||| || |||||||||||||||||||||    
T  25749875 tcaatgactccaatggcaatacactaataagaactccatgaaaaa-tacttaaatatgtcccactaactttacattattatacaaaaataatttattact 25749973  T
Q  171 tcttttgcaagtgggatcaaccagtacatattttattactt 211  Q
    | |||||||||||||| ||||||||||||||||||||||||    
T  25749974 tattttgcaagtgggaccaaccagtacatattttattactt 25750014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 21848188 - 21848319
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||||||||||||||  ||  |||||| || |||||||||||||||| |||||| |||| | ||||| ||||||||||||||||||||| |||||     
T  21848188 tttataattttttaataaaaatacttattaaggactcaatgactccaatgaaaatacactaatcaagactccaataaaaagtacttaaataggtcccact 21848287  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||| ||||| ||||||||||||||||||    
T  21848288 aactttatatcattatacaaaaataatttatt 21848319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 3703449 - 3703580
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| |||||||||| |||  |||||| || |||||||||||  ||  ||||||||||||| || |  ||||||||||||||| ||||| |||||     
T  3703449 tttataatattttaataaaagtacctattaaggactcaatgactccggtggaaatacattaataaggattacaataaaaagtacttatataggtcccact 3703548  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||||||| | ||||||||||||||||    
T  3703549 aactttacatcattaaacaaaaataatttatt 3703580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 37847821 - 37847690
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| |||||||||| |||  |||||| || |||||||||||||||  |  ||| |||||| ||||||||| |||| |||||||||||||| |||     
T  37847821 tttataatattttaataaaagtacatattaaggactcaatgactccaatggaagaacactaataaggactctaatgaaaaatacttaaataggccacact 37847722  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||||| | | ||||||||||||||||    
T  37847721 tactttacatctttaaacaaaaataatttatt 37847690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 27957580 - 27957500
Alignment:
Q  137 actttacatcatcatacaaaaataatttattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    ||||||||||||  |||||||||||||||||| ||||||||||| |||||  |||||||| |||||||||||||| |||||    
T  27957580 actttacatcattttacaaaaataatttattatttcttttgcaattgggactaaccagtatatattttattacttctttta 27957500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 28967585 - 28967689
Alignment:
Q  61 tattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaata 160  Q
    |||||| |||||||||||||||||||||||| | |||||||||||| ||| ||||||||||||||| |  |||    ||||||||||| | |||||||||    
T  28967585 tattaaggattcaatgactccaatgacaataaagtaataatgactccaatgaaaagtacttaaatatgttccattatctttacatcattaaacaaaaata 28967684  T
Q  161 attta 165  Q
    |||||    
T  28967685 attta 28967689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 2968815 - 2968946
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| |||||||||| |||  ||||||  | |||||| |||||||   | |||| |||||| ||||| ||  |||||||||||||||||| ||||     
T  2968815 tttataatattttaataaaagtacttattaagaactcaatggctccaataggagtacactaataaggactccaacgaaaagtacttaaataggctccact 2968914  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||||||| | ||||||||||||||||    
T  2968915 aactttacatcattaaacaaaaataatttatt 2968946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 27559128 - 27559033
Alignment:
Q  73 aatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttatta 168  Q
    ||||||||||||| |||||||||||||| || || ||| |||| |||||||||| |||||||  ||||| ||| || | |||||||||||||||||    
T  27559128 aatgactccaatggcaatacattaataaggattcaaatgaaaaatacttaaatatgccccactaactttgcattattaaacaaaaataatttatta 27559033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 39446308 - 39446250
Alignment:
Q  159 taatttattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    |||| |||||||||||||||||||||||||||| | ||||||||||||||||| |||||    
T  39446308 taatatattacttcttttgcaagtgggatcaactaatacatattttattacttctttta 39446250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 217
Target Start/End: Original strand, 42029584 - 42029724
Alignment:
Q  76 gactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttattacttcttt 175  Q
    |||||||||||||||||| |||||| ||||  ||| |||| ||||||||||   || ||  |||||||||||| | |||||||||| |||||| ||||||    
T  42029584 gactccaatgacaatacactaataaagacttcaatgaaaaatacttaaataaatccaactaactttacatcattaaacaaaaataa-ttattatttcttt 42029682  T
Q  176 tgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    |  ||||| || |||  | ||||||||||||||||| |||||    
T  42029683 tataagtgagaccaaataatacatattttattacttctttta 42029724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 37456139 - 37456044
Alignment:
Q  73 aatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttatta 168  Q
    ||||||||||||| ||||||| |||||| || || ||| |||| |||||||||| |||||||  ||||| ||| || | |||||||||||||||||    
T  37456139 aatgactccaatggcaatacactaataaggattcaaatgaaaaatacttaaatatgccccactaactttgcattattaaacaaaaataatttatta 37456044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 36751002 - 36750938
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataa 100  Q
    ||||||||||||||||||| |||  |||||| |||| ||||||||||||||||||| | ||||||    
T  36751002 tttataattttttaataaaagtacctattaaagatttaatgactccaatgacaatatactaataa 36750938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 39446450 - 39446362
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaata 126  Q
    |||||||||||||||| ||  ||  |||||| || ||||||||||||||||||||||| |  ||| ||||| ||| |||||||||||||||    
T  39446450 tttataattttttaatgaaaatacttattaaggactcaatgactccaatgacaatacact--taaggactccaattaaaagtacttaaata 39446362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 12671913 - 12671787
Alignment:
Q  41 aattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactt 140  Q
    ||||||||||||||  ||| | |||| ||||||||||||| |||||||||||| |||||  ||||| ||| |||| || ||||||  | || ||  ||||    
T  12671913 aattttttaataaaaatatttgttaaggattcaatgactcaaatgacaatacactaatacagactccaatgaaaaatatttaaatgagtcctactaactt 12671814  T
Q  141 tacatcatcatacaaaaataatttatt 167  Q
    ||||| || |||||||| | |||||||    
T  12671813 tacattattatacaaaagtcatttatt 12671787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 44059396 - 44059283
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaa-tgacaatacattaataatgactctaataaaaagtacttaaataggccccac 134  Q
    |||||||| |||||||||| |||  |||||| || ||||||||||||| ||  | |||| |||||| ||||| ||| ||||||||||||||||  |||||    
T  44059396 tttataatattttaataaaagtacttattaaggactcaatgactccaattgggagtacactaataaggactccaatgaaaagtacttaaatagatcccac 44059297  T
Q  135 ccactttacatcat 148  Q
      ||||||| ||||    
T  44059296 taactttacgtcat 44059283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 10624955 - 10624826
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||| ||||||||||| |||  || | | || ||||| |||||||||| |||| | ||||||  |||| ||| |||||||||||||||   |||||     
T  10624955 tttataactttttaataaaagtacttacttaggactcaataactccaatgagaatatactaataagaactccaattaaaagtacttaaatatatcccact 10624856  T
Q  136 cactttacatcatcatacaaaaataattta 165  Q
      |||||||| || | ||||||||||||||    
T  10624855 atctttacattattaaacaaaaataattta 10624826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 12863542 - 12863671
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| ||||||||||  ||  |||||| || ||||||||||||||   | ||| ||||||| |||   ||| |||| ||||||||||| ||||||     
T  12863542 tttataatattttaataaaaatacatattaaggactcaatgactccaatagtagtaccttaataaggacatcaatgaaaaatacttaaatagaccccact 12863641  T
Q  136 cactttacatcatcatacaaaaataattta 165  Q
     |||||| ||| | | ||||||||||||||    
T  12863642 aactttatatcgttaaacaaaaataattta 12863671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 22558494 - 22558539
Alignment:
Q  61 tattaatgattcaatgactccaatgacaatacattaataatgactc 106  Q
    |||||| |||| ||||||||||||||||||||| |||||| |||||    
T  22558494 tattaaggattgaatgactccaatgacaatacactaataaagactc 22558539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 37847402 - 37847349
Alignment:
Q  164 tattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    |||||||||||||| |||||||| ||   ||||||||||||||||||| |||||    
T  37847402 tattacttcttttgtaagtgggaccacatagtacatattttattacttctttta 37847349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 7177021 - 7177152
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||||||||||| || |||| |||||| || ||||||||||||||||||||||| |||||| | ||| ||| ||||||||||||||| | |||||     
T  7177021 tttataattttttaatgaaagtatctattaaggactcaatgactccaatgacaatacactaataagggctccaatgaaaagtacttaaataagtcccact 7177120  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||| ||| ||||||||||||||||||    
T  7177121 aactttacaccattatacaaaaataatttatt 7177152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 164
Target Start/End: Original strand, 12795901 - 12796029
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||||||||||||||| |||| |||||| || ||||||||| |||||  | |||| || ||| ||||| ||| |||||||||||||||||||||||     
T  12795901 tttataattttttaataaaagtatctattaaggactcaatgacttcaatggtagtacactagtaaggactccaatgaaaagtacttaaataggccccact 12796000  T
Q  136 cactttacatcatcatacaaaaataattt 164  Q
     |||||||||||| | |||||||||||||    
T  12796001 aactttacatcattaaacaaaaataattt 12796029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 5423607 - 5423517
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaata 126  Q
    ||||||||||||||||||| |||  ||||||||| ||||||||||||||||||||||| |||||| ||||  ||| |||||||||||||||    
T  5423607 tttataattttttaataaaagtacatattaatgactcaatgactccaatgacaatacactaataaggacttcaatgaaaagtacttaaata 5423517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 167
Target Start/End: Original strand, 22800561 - 22800667
Alignment:
Q  61 tattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaata 160  Q
    |||||| || ||||||||||||||||||||||| |||||  ||||| ||| ||| ||||||||||||| |||||  |||||||||||| |||||||| ||    
T  22800561 tattaaggactcaatgactccaatgacaatacactaatagggactccaatgaaatgtacttaaataggtcccactaactttacatcattatacaaaagta 22800660  T
Q  161 atttatt 167  Q
    |||||||    
T  22800661 atttatt 22800667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 14523131 - 14523260
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||||||||||||||| |||  ||||||  | ||||||||| ||||||||||||| |||||| ||||| | | ||||||||||||||| |  ||||     
T  14523131 tttataattttttaataaaagtagttattaagaactcaatgacttcaatgacaatacactaataaggactccactgaaaagtacttaaatatgttccact 14523230  T
Q  136 cactttacatcatcatacaaaaataattta 165  Q
      ||||||||||| | ||||||||||||||    
T  14523231 atctttacatcattaaacaaaaataattta 14523260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 165
Target Start/End: Complemental strand, 1581581 - 1581489
Alignment:
Q  73 aatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataattta 165  Q
    |||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||| | |||||   ||||||||||| | ||||||||||||||    
T  1581581 aatgactcgaatgacaatacattaataaggactccaatgaaaagtacttaaatatgtcccactatctttacatcattaaacaaaaataattta 1581489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 12532288 - 12532417
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| ||||||||||  ||  |||||| || |||||||||||||||  |||||| |||||| || |||||| ||||||||||||| | | |||||     
T  12532288 tttataatattttaataaaaatacctattaaggactcaatgactccaatggtaatacactaataaagattctaatgaaaagtacttaaacatgtcccact 12532387  T
Q  136 cactttacatcatcatacaaaaataattta 165  Q
      ||||||||||| | ||||||||||||||    
T  12532388 atctttacatcattaaacaaaaataattta 12532417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 12796294 - 12796338
Alignment:
Q  164 tattacttcttttgcaagtgggatcaaccagtacatattttatta 208  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  12796294 tattacttcttttgcaagtgggatcaactagtacatattttatta 12796338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 7177375 - 7177428
Alignment:
Q  164 tattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    ||||||||||||| |||||||||||||| |||||||||||||||| || |||||    
T  7177375 tattacttcttttacaagtgggatcaactagtacatattttattaattctttta 7177428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 166
Target Start/End: Complemental strand, 13282258 - 13282128
Alignment:
Q  39 ataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactc---taataaaaagtacttaaataggccccacc 135  Q
    |||||||||||||||| |||  |||||| ||||||||||||| |||||||||||| |||  |  ||||   | | |||||||| ||||||||  |||||     
T  13282258 ataattttttaataaacgtacatattaaggattcaatgactctaatgacaatacactaaccagaactcccatgacaaaaagtaattaaatagatcccact 13282159  T
Q  136 cactttacatcatcatacaaaaataatttat 166  Q
     |||||||||||| | |||||| ||||||||    
T  13282158 aactttacatcattaaacaaaactaatttat 13282128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 41438545 - 41438497
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaat 84  Q
    |||||||| |||||||||| |||| |||||| |||||||||||||||||    
T  41438545 tttataatattttaataaaagtatttattaaggattcaatgactccaat 41438497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 8692992 - 8693123
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||||||| ||||||  | | ||||||  | ||||||||| ||||||||||| |  ||||| || || ||| ||||||  ||||||||| || ||     
T  8692992 tttataatttttaaataaaaatttctattaagaactcaatgacttcaatgacaataaaccaataaggattccaatgaaaagttgttaaataggtcctact 8693091  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     ||||||||| || |||||||| |||||||||    
T  8693092 aactttacattattatacaaaagtaatttatt 8693123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 167
Target Start/End: Original strand, 11989709 - 11989808
Alignment:
Q  68 gattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttatt 167  Q
    |||||||||||||||||||||||||| ||| |  ||||| ||| |||||| |||||||| | | |||  | |||||||||| ||  |||| |||||||||    
T  11989709 gattcaatgactccaatgacaatacactaacatggactccaatgaaaagtgcttaaatatgtctcactaattttacatcattatgtaaaagtaatttatt 11989808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 43976747 - 43976697
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatga 86  Q
    ||||||||||||||||||| |||  |||||| || ||||||||||||||||    
T  43976747 tttataattttttaataaaagtacctattaaggactcaatgactccaatga 43976697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Original strand, 45251232 - 45251282
Alignment:
Q  167 tacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    ||||||||||||||||| || |||| ||||||| ||||||||||| |||||    
T  45251232 tacttcttttgcaagtgagaccaactagtacatgttttattacttctttta 45251282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 13282097 - 13282044
Alignment:
Q  164 tattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    |||||||||||||||||||| || |||  ||||||||| ||||||||| |||||    
T  13282097 tattacttcttttgcaagtgagaccaagtagtacatatattattacttctttta 13282044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 38068219 - 38068088
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| ||||||||||  ||  ||||||||| |||||| ||||||||| | |||| |||||| ||||| |||||||||||||||||||||||||||     
T  38068219 tttataatattttaataaaaatacatattaatgactcaatggctccaatgagagtacactaataaggactccaataaaaagtacttaaataggccccact 38068120  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||||||| | ||||||||||||||||    
T  38068119 aactttacatcattaaacaaaaataatttatt 38068088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 37450952 - 37450771
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaag----tacttaaataggccc 131  Q
    |||||||||||||||| || |||    |||| || ||||||||||||||||||||| | |||| ||||||  ||||||||     |||||||||||| ||    
T  37450952 tttataattttttaatgaaagtac---ttaaggactcaatgactccaatgacaatatactaatgatgacttcaataaaaaaaatatacttaaataggtcc 37450856  T
Q  132 cacccactttacatcatcatacaaaaataatttattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
     ||  | |||||||||| |  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  37450855 -actaattttacatcattacccaaaaataatttattacttcttttgcaagtgggatcaaccaatacatattttattacttctttta 37450771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 36 - 168
Target Start/End: Original strand, 13678583 - 13678715
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| | |||||||| |||  |||||| || ||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||||| |||||||     
T  13678583 tttataatatattaataaaagtacttattaaagactcaatgactccaatgacaatacactaataaggactcaaatgaaaagtacttaaatatgccccact 13678682  T
Q  136 cactttacatcatcatacaaaaataatttatta 168  Q
     ||||| |||||| | |||||||||||||||||    
T  13678683 aactttgcatcattaaacaaaaataatttatta 13678715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 38168097 - 38168227
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| |||||||||| |||| |||||| || ||||||||||||||   ||||||||||||| ||||| ||| ||||||||||||||| |||||||     
T  38168097 tttataatattttaataaaagtatttattaaagactcaatgactccaatagaaatacattaataaggactccaatgaaaagtacttaaataagccccact 38168196  T
Q  136 cactttacatcatcatacaaaaataatttat 166  Q
     | |||||||||| | |||||||||||||||    
T  38168197 aattttacatcattaaacaaaaataatttat 38168227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 211
Target Start/End: Complemental strand, 4711717 - 4711546
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||||||||||||||| |||| |||||| |||| ||| ||| |||||  ||||||||||||| ||||| ||| |||    |||||||| |   |||     
T  4711717 tttataattttttaataaaagtatctattaaggatttaataacttcaatggtaatacattaataaggactccaatgaaa----cttaaatatgttgcact 4711622  T
Q  136 cactttacatcatcatacaaaaataatttattacttcttttgcaagtgggatcaaccagtacatattttattactt 211  Q
     |||||||||||| | ||||||||||||||||| ||||||| ||||| |||| ||  |||||||||||||||||||    
T  4711621 aactttacatcattaaacaaaaataatttattatttcttttacaagttggattaagtagtacatattttattactt 4711546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 210
Target Start/End: Original strand, 44991729 - 44991906
Alignment:
Q  38 tataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccaccca 137  Q
    ||||||||||||||||| |||  |||||| || ||||||||||||||| ||||||| |||||| ||||| ||| |||| |||||||||| | |||||       
T  44991729 tataattttttaataaaagtacctattaaggactcaatgactccaatggcaatacactaataaggactccaatgaaaaatacttaaatatgtcccactat 44991828  T
Q  138 ctttacatcatcatacaaaaataattta----ttacttcttttg-caagtgggatcaaccagtacatattttattact 210  Q
    ||||||||||| | ||||||||||||||    ||||| |||||  ||||||||| |||  |||||| |||||||||||    
T  44991829 ctttacatcattaaacaaaaataatttacctattactcctttttacaagtgggaccaagtagtacacattttattact 44991906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 19854071 - 19853994
Alignment:
Q  90 tacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttatt 167  Q
    |||| |||||| |||| ||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||    
T  19854071 tacactaataaggactttaataaaaagtacttaaataggccccactaactttacatcatcaaacaaaaataatttatt 19853994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 27064416 - 27064545
Alignment:
Q  38 tataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccaccca 137  Q
    ||||||||||||||||| || | ||||||  |||||||||||| |||||||||||| |||||  ||||| |||||||| |  ||||||| | | |||  |    
T  27064416 tataattttttaataaaagtttttattaagaattcaatgactctaatgacaatacactaatagggactccaataaaaactgtttaaatatgtctcactaa 27064515  T
Q  138 ctttacatcatcatacaaaaataatttatt 167  Q
    ||||||||||| ||||||||||||||||||    
T  27064516 ctttacatcattatacaaaaataatttatt 27064545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 165
Target Start/End: Complemental strand, 51175655 - 51175526
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||||||||||||||| |||  |||||| || ||||||||||||||| |||||||||||||| ||||| |||  ||| |||||||||| | |||||     
T  51175655 tttataattttttaataaaagtacctattaaggactcaatgactccaatggcaatacattaataaggactccaattcaaaatacttaaatatgtcccact 51175556  T
Q  136 cactttacatcatcatacaaaaataattta 165  Q
      ||||||||||| | || |||||||||||    
T  51175555 atctttacatcattaaacgaaaataattta 51175526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 217
Target Start/End: Original strand, 56397059 - 56397232
Alignment:
Q  44 tttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttac 143  Q
    |||||||| || |||  |||||| |||| ||||||||||||||||||||   ||||| ||||  ||| |||| |||||||||| |   ||   |||||||    
T  56397059 tttttaatgaaagtacctattaaggatttaatgactccaatgacaatacgcgaataaggacttcaatgaaaaatacttaaatatgtgtcattaactttac 56397158  T
Q  144 atcatcatacaaaaataatttattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    ||||| ||||||||||||||||| ||||||||| ||||| |||||||| | | |||||||||||| || |||||    
T  56397159 atcattatacaaaaataatttataacttcttttacaagtcggatcaactactgcatattttattatttctttta 56397232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 36904305 - 36904174
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| |||||||||| |||| ||| || ||||||||| ||||||||  | |||| |||||| ||||| | | |||| ||||||||||||| ||||     
T  36904305 tttataatattttaataaaagtatttatcaaggattcaatggctccaatgggagtacactaataaggactccagtgaaaaatacttaaataggctccact 36904206  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||||||| | ||||||||||||||||    
T  36904205 aactttacatcattaaacaaaaataatttatt 36904174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 17058776 - 17058900
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| |||||||||| |||  |||||| || ||||||||||||||   | |||| |||||| ||||| ||| |||||||||||||||||||||||     
T  17058776 tttataatattttaataaaagtagctattaaggactcaatgactccaataggagtacactaataaggactcaaatgaaaagtacttaaataggccccact 17058875  T
Q  136 cactttacatcatcatacaaaaata 160  Q
      ||||||||||| | |||||||||    
T  17058876 atctttacatcattaaacaaaaata 17058900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 39720339 - 39720249
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaata 126  Q
    ||||||||||||||||||| |||  ||||||  | ||||||||| |||| |||||||| |||||||||||| ||| |||||||||||||||    
T  39720339 tttataattttttaataaaagtacctattaagaactcaatgacttcaatcacaatacactaataatgactccaattaaaagtacttaaata 39720249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 12191647 - 12191524
Alignment:
Q  43 ttttttaataaaggtatgtattaat-gattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccacttt 141  Q
    |||||||||||| |||  ||||||  || ||||||||||||||||||||||| |||||| ||||| ||| |||| |||||||||| | | |||   ||||    
T  12191647 ttttttaataaaagtacttattaaaagactcaatgactccaatgacaatacactaataaggactccaatgaaaaatacttaaatatgtctcactatcttt 12191548  T
Q  142 acatcatcatacaaaaataattta 165  Q
    ||||||| | ||||||||||||||    
T  12191547 acatcattaaacaaaaataattta 12191524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 167
Target Start/End: Original strand, 27085527 - 27085649
Alignment:
Q  44 tttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttac 143  Q
    ||||||||||| || | ||||||  |||||||||||| |||||||||||| |||||  ||||| |||||||| |  ||||||| | | |||  |||||||    
T  27085527 tttttaataaaagttt-tattaagaattcaatgactctaatgacaatacactaatagggactccaataaaaactgtttaaatatgtctcactaactttac 27085625  T
Q  144 atcatcatacaaaaataatttatt 167  Q
    ||||| ||||||||||||||||||    
T  27085626 atcattatacaaaaataatttatt 27085649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 5744801 - 5744896
Alignment:
Q  73 aatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttatta 168  Q
    ||||||||||||| ||||||| |||||| || || ||| |||| |||||||||| |||||||  ||||| ||| || | |||||||||||||||||    
T  5744801 aatgactccaatggcaatacactaataaggattcaaatgaaaaatacttaaatatgccccactaactttgcattattaaacaaaaataatttatta 5744896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 13665785 - 13665858
Alignment:
Q  95 taataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttatta 168  Q
    |||||| ||||| ||| ||||||||||||||| |||||||  ||||| |||||| | |||||||||||||||||    
T  13665785 taataaggactcaaatgaaaagtacttaaatatgccccactaactttgcatcattaaacaaaaataatttatta 13665858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 38068635 - 38068554
Alignment:
Q  45 ttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaata 126  Q
    |||||||||| |||  |||||| || |||||||||| |||||||||||| |||||| ||||| ||  |||||||||||||||    
T  38068635 ttttaataaaagtacctattaaggactcaatgactctaatgacaatacactaataaggactccaaagaaaagtacttaaata 38068554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 168
Target Start/End: Original strand, 30482923 - 30483010
Alignment:
Q  81 caatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttatta 168  Q
    |||||| ||||||||||||  ||||| |||||||| || ||||||||| | ||   |||||||||||| |||||||| ||||||||||    
T  30482923 caatgataatacattaatagagactccaataaaaaatatttaaataggtcgcattaactttacatcattatacaaaagtaatttatta 30483010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 49551792 - 49551871
Alignment:
Q  137 actttacatcatcatacaaaaataatttattacttcttttgcaagtgggatcaaccagtacatattttattacttatttt 216  Q
    ||||||||| || | ||||||||||||||||| || ||| | |||| ||||||||   ||||||||||||||||| ||||    
T  49551792 actttacattattacacaaaaataatttattagttatttagaaagtaggatcaactcatacatattttattacttctttt 49551871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 32409623 - 32409573
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatga 86  Q
    ||||||||||||||||||| |||  |||||| || ||||||||||||||||    
T  32409623 tttataattttttaataaaagtacctattaaagactcaatgactccaatga 32409573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 45832099 - 45832181
Alignment:
Q  44 tttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaata 126  Q
    ||||||||||| |||  ||||||  | ||||| ||||||||| ||||||| |||||| ||||| ||| ||| |||||||||||    
T  45832099 tttttaataaaagtacttattaagaactcaatcactccaatggcaatacactaataaggactccaatgaaaggtacttaaata 45832181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 56228173 - 56228294
Alignment:
Q  45 ttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttaca 144  Q
    |||||||||| |||  | |||| || ||||| |||||||||  | ||||||||||| ||||| ||| ||||||| |||||||| | ||||  || |||||    
T  56228173 ttttaataaaagtacctgttaaagactcaatcactccaatggaagtacattaataaggactccaatgaaaagtatttaaatagacaccactaac-ttaca 56228271  T
Q  145 tcatcatacaaaaataatttatt 167  Q
    |||| | |||||| |||||||||    
T  56228272 tcattaaacaaaactaatttatt 56228294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 19853182 - 19853129
Alignment:
Q  164 tattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    |||||||||||||| ||| |||| ||   |||||||||||||||||||||||||    
T  19853182 tattacttcttttgtaagcgggaccacatagtacatattttattacttatttta 19853129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 31066292 - 31066423
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||||||||||||||| |||| |||||| || | |||||||| |||||||||||| |||||  || || ||| |||| |||||||||| | |||||     
T  31066292 tttataattttttaataaaagtatctattaaggacttaatgactctaatgacaatacactaatatggattccaatgaaaaatacttaaatatgtcccact 31066391  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||||||| |||||||| |||||||||    
T  31066392 aactttacatcattatacaaaagtaatttatt 31066423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 202
Target Start/End: Complemental strand, 4898278 - 4898156
Alignment:
Q  81 caatgacaatacattaataatg-actctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttattacttcttttgca 179  Q
    ||||||||||||| |||||| | |||| ||| ||||||||||||||| | | |||   |||||||| || ||||||||||||||||||||||||||| ||    
T  4898278 caatgacaatacactaataagggactccaatgaaaagtacttaaataagtctcactagctttacattattatacaaaaataatttattacttcttttaca 4898179  T
Q  180 agtgggatcaaccagtacatatt 202  Q
    ||||||| |||||||| ||||||    
T  4898178 agtgggaccaaccagtgcatatt 4898156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 31046350 - 31046481
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||||||||||||||| |||| |||||| || |||||||||| || ||||||||| |||||  || |  |||||||| |||||||||| | || ||     
T  31046350 tttataattttttaataaaagtatctattaaggactcaatgactctaaagacaatacactaatatggatttcaataaaaaatacttaaatatgtccgact 31046449  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||||||| |||||||| |||||||||    
T  31046450 aactttacatcattatacaaaagtaatttatt 31046481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 166
Target Start/End: Original strand, 8516886 - 8517016
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    ||||||||||||||||||| |||  |||||| || |||||||||| |||||||||||| ||| |   |||| |||||||| |||||||||| |  ||||     
T  8516886 tttataattttttaataaaagtacttattaaggactcaatgactctaatgacaatacactaacatgaactccaataaaaaatacttaaatatgttccact 8516985  T
Q  136 cactttacatcatcatacaaaaataatttat 166  Q
      ||||||||||| | |||||||||||||||    
T  8516986 atctttacatcattaaacaaaaataatttat 8517016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 12883145 - 12883274
Alignment:
Q  38 tataattttttaataaaggtatgtattaatgattcaatgactccaatgacaa-tacattaataatgactctaataaaaagtacttaaataggccccaccc 136  Q
    |||||| |||||||||| |||  ||||||||| |||||||||||||||| || |||| |||||| ||||| ||| |||||||||||||||  ||||||      
T  12883145 tataatattttaataaaagtacttattaatgactcaatgactccaatgagaagtacactaataa-gactccaatgaaaagtacttaaatataccccactt 12883243  T
Q  137 actttacatcatcatacaaaaataatttatt 167  Q
    |||||| ||||| |  |||||||||||||||    
T  12883244 actttatatcattaagcaaaaataatttatt 12883274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 15958699 - 15958789
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaata 126  Q
    |||||||||||||||||||  ||  |||||| || ||||| ||||||||||||||||| |||||| ||||| ||| |||||||||||||||    
T  15958699 tttataattttttaataaaattacctattaaagactcaataactccaatgacaatacactaataaggactccaatgaaaagtacttaaata 15958789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 565480 - 565353
Alignment:
Q  40 taattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccact 139  Q
    |||||||||||| || |||  |||||| || ||||| ||||||||||||||||| |||||| ||||| | | ||||||||||||||| |  ||||  | |    
T  565480 taattttttaatgaaagtacttattaaggactcaataactccaatgacaatacactaataaggactccattgaaaagtacttaaatatgttccactaaat 565381  T
Q  140 ttacatcatcatacaaaaataatttatt 167  Q
    ||| ||||| ||| ||||||||||||||    
T  565380 ttagatcattataaaaaaataatttatt 565353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 167
Target Start/End: Complemental strand, 4396351 - 4396221
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| ||||||||||  | | |||||| |||||||||||||||||| || || | ||| || |||| |||| |||| |||||||||||||| |||     
T  4396351 tttataatattttaataaaatt-tatattaaggattcaatgactccaatggcagtatactaacaaggactttaatgaaaaatacttaaataggccacact 4396253  T
Q  136 cactttacatcatcatacaaaaataatttatt 167  Q
     |||||||||||| ||| |||| |||||||||    
T  4396252 aactttacatcattataaaaaagtaatttatt 4396221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 31051411 - 31051474
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaata 99  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||| || ||||||||| |||||    
T  31051411 tttataattttttaataaaagtatctattaaagattcaatgactctaaagacaatacactaata 31051474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 12883523 - 12883576
Alignment:
Q  164 tattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    |||||||||||||| ||||| ||||||  ||||||||||||||||||| |||||    
T  12883523 tattacttcttttgtaagtgagatcaaatagtacatattttattacttttttta 12883576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 42075998 - 42076045
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaa 83  Q
    ||||||||||||||||||| |||  |||||||||| ||||||||||||    
T  42075998 tttataattttttaataaaagtacttattaatgatccaatgactccaa 42076045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 1922930 - 1922980
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatga 86  Q
    ||||||||||||||||||| |||  |||||||||| ||| |||||||||||    
T  1922930 tttataattttttaataaaagtacttattaatgatccaacgactccaatga 1922980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0568 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 709 - 833
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||| |||||||||| |||  |||||| || ||||||||||||||   | |||| |||||| ||||| ||| |||||||||||||||||||||||     
T  709 tttataatattttaataaaagtagctattaaggactcaatgactccaataggagtacactaataaggactcaaatgaaaagtacttaaataggccccact 808  T
Q  136 cactttacatcatcatacaaaaata 160  Q
      ||||||||||| | |||||||||    
T  809 atctttacatcattaaacaaaaata 833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 99
Target Start/End: Complemental strand, 1530 - 1467
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaata 99  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||| || ||||||||| |||||    
T  1530 tttataattttttaataaaagtatctattaaagattcaatgactctaaagacaatacactaata 1467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 13764 - 13663
Alignment:
Q  76 gactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttatta-cttctt 174  Q
    |||||||||||||||||| |||||| || || |||  ||| || ||||||||| |||||  |||||||||||| ||| ||||||||| ||||| ||||||    
T  13764 gactccaatgacaatacactaataaggattccaatggaaaatatttaaataggtcccactaactttacatcattatataaaaataatctattagcttctt 13665  T
Q  175 tt 176  Q
    ||    
T  13664 tt 13663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 21501 - 21400
Alignment:
Q  76 gactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacccactttacatcatcatacaaaaataatttatta-cttctt 174  Q
    |||||||||||||||||| |||||| || || |||  ||| || ||||||||| |||||  |||||||||||| ||| ||||||||| ||||| ||||||    
T  21501 gactccaatgacaatacactaataaggattccaatggaaaatatttaaataggtcccactaactttacatcattatataaaaataatctattagcttctt 21402  T
Q  175 tt 176  Q
    ||    
T  21401 tt 21400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 11439 - 11567
Alignment:
Q  36 tttataattttttaataaaggtatgtattaatgattcaatgactccaatgacaatacattaataatgactctaataaaaagtacttaaataggccccacc 135  Q
    |||||||||||||||||||  ||  |||||| |||| ||||||| |||||  |||| | |||||| ||||| ||| ||||||||||||||| | ||||      
T  11439 tttataattttttaataaaattacctattaaagatttaatgacttcaatg-taatatactaataaggactcaaatgaaaagtacttaaatatgtcccata 11537  T
Q  136 cactttacatcatcatacaaaaataattta 165  Q
      ||||||||||| | ||||||||||||||    
T  11538 atctttacatcattaaacaaaaataattta 11567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 175354 - 175301
Alignment:
Q  164 tattacttcttttgcaagtgggatcaaccagtacatattttattacttatttta 217  Q
    ||||||||||||||  |||||||||||  ||||||||||||||||||| |||||    
T  175354 tattacttcttttggtagtgggatcaaatagtacatattttattacttctttta 175301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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