View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10970_high_41 (Length: 208)

Name: NF10970_high_41
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10970_high_41
NF10970_high_41
[»] chr3 (10 HSPs)
chr3 (18-194)||(22441316-22441492)
chr3 (16-194)||(22366493-22366674)
chr3 (16-194)||(22435203-22435381)
chr3 (25-139)||(22352418-22352532)
chr3 (26-195)||(22629025-22629194)
chr3 (32-136)||(22466545-22466649)
chr3 (27-194)||(22634041-22634208)
chr3 (26-139)||(22356557-22356670)
chr3 (26-65)||(22457092-22457131)
chr3 (26-65)||(22480073-22480112)


Alignment Details
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 22441316 - 22441492
Alignment:
Q  18 gagatattgagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgtga 117  Q
    ||||||| |||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||| ||||| ||||    ||||||||||||||| |||    
T  22441316 gagatatggagggacaacaagtttggcatacttatgagtaatttcattgcatcattttgttgcttcgtaagtgtcactctaagcttaacaaggtttctga 22441415  T
Q  118 gttttgaaatccactcaggcaatttctctaaatttccgaagagtataaaatgttgaatcttaggtgggggtgaattc 194  Q
    |||||  |||||||||||| || || | |||||| |||  || | ||| |||||||| |||||||||||||||||||    
T  22441416 gtttttgaatccactcaggaaacttatataaattcccgtcgaatttaacatgttgaagcttaggtgggggtgaattc 22441492  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 22366493 - 22366674
Alignment:
Q  16 cagagatattgagggacaacaagtttggcatactttggagtaatttcattgcatcattc---tgttgcttcataagtttcacctccagcttaacaaggtt 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||   |  | |||| ||||| |||||| ||  | |||||||||    
T  22366493 cagagatatggagggacaacaagtttggcatactttggagtaatttcattgcatcgttcccttcctccttcgtaagtctcaccttcatgtcaacaaggtt 22366592  T
Q  113 tgtgagttttgaaatccactcaggcaatttctctaaatttccgaagagtataaaatgttgaatcttaggtgggggtgaattc 194  Q
    ||||||||||| |||||||||||| || |||| |||||| ||| |||||  || |||||||| | |||||||||||||||||    
T  22366593 tgtgagttttggaatccactcaggaaacttctttaaattcccgtagagtccaatatgttgaagcataggtgggggtgaattc 22366674  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 22435203 - 22435381
Alignment:
Q  16 cagagatattgagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgt 115  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||  || ||||| | ||  ||  |||||||||||||| |||      
T  22435203 cagagatatggagggacaacaagtttggcatactttgaagtaatttcattgcatcattcacttccttcaaacgtggcaaatccagcttaacaagattttg 22435302  T
Q  116 gagttttgaaatccactcaggcaatttctctaaatttccgaagagtataaaatgttgaatcttaggtgggggtgaattc 194  Q
    ||||||||||||||||||||| || || | | ||| ||| |||||| ||| | ||| || | |||||||||||||||||    
T  22435303 gagttttgaaatccactcaggaaacttatttgaatatccaaagagtttaacacgttcaagcctaggtgggggtgaattc 22435381  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 22352418 - 22352532
Alignment:
Q  25 tgagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgtgagttttga 124  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||  ||| ||||| | |||||||||||| ||   |||||||||    
T  22352418 tgagggacaacaaatttggcatactttggagtaatttcattgcatcattctctggcttcggaagattcactttcagcttaacaagattctggagttttga 22352517  T
Q  125 aatccactcaggcaa 139  Q
    |||||||||||||||    
T  22352518 aatccactcaggcaa 22352532  T

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Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 22629025 - 22629194
Alignment:
Q  26 gagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgtgagttttgaa 125  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||||||||  ||||||| ||||  ||||   |||||||||||| ||   ||||||||||    
T  22629025 gagggacagcaattttcgcatactttggagtaatttcattgcatcattcccttgcttcgtaagcatcactctcagcttaacaagattctggagttttgaa 22629124  T
Q  126 atccactcaggcaatttctctaaatttccgaagagtataaaatgttgaatcttaggtgggggtgaattct 195  Q
    ||||||||||| |||||||  |||| |||  ||||| ||| | |||||| | ||||||||||||| ||||    
T  22629125 atccactcaggtaatttcttaaaatatccatagagtttaacacgttgaagcctaggtgggggtgacttct 22629194  T

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Target: chr3; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 22466545 - 22466649
Alignment:
Q  32 caacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgtgagttttgaaatccac 131  Q
    |||||||||||||||||||||||||||||||||||||||||||  || |||| ||| | ||||||  |||| |||||| ||| |||||||||||||||||    
T  22466545 caacaagtttggcatactttggagtaatttcattgcatcattcccttccttcctaactgtcaccttgagctcaacaagatttttgagttttgaaatccac 22466644  T
Q  132 tcagg 136  Q
    |||||    
T  22466645 tcagg 22466649  T

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Target: chr3; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 27 - 194
Target Start/End: Original strand, 22634041 - 22634208
Alignment:
Q  27 agggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgtgagttttgaaa 126  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||  || |||| |||   |||||| || |||||| || | |  |||||||||||    
T  22634041 agggacaacaagtttggcatacttttgagtaatttcattgcatcattcccttccttcgtaatcgtcaccttcaacttaacgagatattggagttttgaaa 22634140  T
Q  127 tccactcaggcaatttctctaaatttccgaagagtataaaatgttgaatcttaggtgggggtgaattc 194  Q
    |||||||||||||||||  |||||  || |  ||| ||| | |||||| ||| |||||||||||||||    
T  22634141 tccactcaggcaatttcaataaataccctataagtttaacacgttgaagctttggtgggggtgaattc 22634208  T

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Target: chr3; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 22356557 - 22356670
Alignment:
Q  26 gagggacaacaagtttggcatactttggagtaatttcattgcatcattctgttgcttcataagtttcacctccagcttaacaaggtttgtgagttttgaa 125  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||  || | || ||||  | || | |||||| ||||| |||  ||||||||||    
T  22356557 gagggacaacaaatttggcatactttggagtaatttcattgcatcattcacttccctcgtaaggcttacattcagcttgacaagattttggagttttgaa 22356656  T
Q  126 atccactcaggcaa 139  Q
    ||||||||||||||    
T  22356657 atccactcaggcaa 22356670  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 22457092 - 22457131
Alignment:
Q  26 gagggacaacaagtttggcatactttggagtaatttcatt 65  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  22457092 gagggtcaacaagtttggcatacttttgagtaatttcatt 22457131  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 22480073 - 22480112
Alignment:
Q  26 gagggacaacaagtttggcatactttggagtaatttcatt 65  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  22480073 gagggtcaacaagtttggcatacttttgagtaatttcatt 22480112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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