View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10970_high_7 (Length: 416)
Name: NF10970_high_7
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10970_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 31595994 - 31596387
Alignment:
| Q |
1 |
aagtgatattgtttattatacttaccaatcacaattaacctcctgtcccgttttgaccctacatttcaaaaatcaaattagatagaacttatacattcat |
100 |
Q |
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| T |
31595994 |
aagtgatatcgtttattatacttaccaatcacaattaacctcctgtcccgttttgaccctacatttcaaaaatcaaattagatagaacttatacattcat |
31596093 |
T |
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| Q |
101 |
tgtttagtagagaaatgcacatttattctctcattgctttgcattttgtagcagcaaagaagacaaatagcctccaaaaatcttatacatgccactattg |
200 |
Q |
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| T |
31596094 |
tgtttagtagagaaatgcacatttattctctcattgctttgcattttttagcagcaaagaagacaaatagcctccaaaaatcttatacatgccacta--- |
31596190 |
T |
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| Q |
201 |
tttgtaggctttgatgaagagcaaattttggatgnnnnnnngggtaaaagcaatgttgaacaacaaattcatgttgattttgatagggaaaacagaaaag |
300 |
Q |
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| T |
31596191 |
-ttgtaggctttgatgaagagcaaattttggatg-tttttggggtaaaagcaatgttgaacaacaaattcatgttgattttgatagggaaaacagaaaag |
31596288 |
T |
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| Q |
301 |
aaataccgcaggctttggacaaatgcacaacctatagaaacatataactactttgttc--ctaacagagaagaaagactctagtctttggacaatgcac |
397 |
Q |
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| T |
31596289 |
aaagaccgcaggctttggacaaatgcacaatctatagaaacatataactactttgttcctctaacagagaagaaaaactctagtctttggacaatgcac |
31596387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 31609193 - 31609536
Alignment:
| Q |
1 |
aagtgatattgtttattatacttaccaatcacaattaacctcctgtcccgttttgaccctacatttcaaaaatcaaattagatagaacttatacattcat |
100 |
Q |
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| T |
31609193 |
aagtggtattgtttattattcttaccaatcacaataaacctcctgttccgttttgaccctacaattcaaaaatcaaattagatagaacttatacatgcat |
31609292 |
T |
|
| Q |
101 |
tgtttagtagagaaatgcacatttattctctcattgctttgcattttgtagcagcaaagaagacaaatagcctccaaaaatcttatacatgccactattg |
200 |
Q |
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||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| || ||||||||||| |
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| T |
31609293 |
tgtctagaagagaaatgctcatttattctctcattgctttgcattttgtagcagcaaagaagagaaatagcttccaagaatcttctatatgccactatt- |
31609391 |
T |
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| Q |
201 |
tttgtaggctttgatgaagagcaaattttggatgnnnnnnngggtaaaagcaatgttgaacaacaaattcatgttgattttgatagggaaaacagaaaag |
300 |
Q |
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||||||||||||||||||| |||| |||||| | |||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||| |
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| T |
31609392 |
attgtaggctttgatgaagaacaaaatttggacg-tttttggggtaaaagcaatgttgaacaacacattcatgttggttttgataggaaaaacagaaaag |
31609490 |
T |
|
| Q |
301 |
aaataccgcaggctttggacaaatgcac-aacctatagaaacatata |
346 |
Q |
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||| || |||| |||||||| ||||||| |||||||||||||||||| |
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| T |
31609491 |
aaagactgcagcctttggac-aatgcacaaacctatagaaacatata |
31609536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 31615735 - 31615829
Alignment:
| Q |
252 |
aatgttgaacaacaaattcatgttgattttgatagggaaaacagaaaagaaataccgcaggctttggacaaatgcacaacctatag-aaacatat |
345 |
Q |
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| T |
31615735 |
aatgttgaactatacattcatgttgattttgatggggaaaacagagaagaaagactgcggcctttgaaaaaatgcacaacctatagcaaacatat |
31615829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 31586350 - 31586439
Alignment:
| Q |
1 |
aagtgatattgtttattatacttaccaatcacaattaacctcctgtcccgttttgaccctacatttcaaaaatcaaattagatagaacttata |
93 |
Q |
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| T |
31586350 |
aagtgatattgttaattattcttacctattacaag---cccccggttccgttttgaacctacaattcaaaaattaaattagatagaacttata |
31586439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 337
Target Start/End: Original strand, 31605854 - 31605946
Alignment:
| Q |
246 |
aaaagcaatgttgaacaacaaattcatgttgattttgat-agggaaaacagaaaagaaataccgcaggctttggacaaatgcacaacctatag |
337 |
Q |
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|||| |||| |||||||||| | |||||||||||||||| |||||||| || || ||| || |||| | ||||| ||||||||||||||||| |
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| T |
31605854 |
aaaaacaattttgaacaacacactcatgttgattttgatgggggaaaacggagaaaaaagactgcagccgttggaaaaatgcacaacctatag |
31605946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 92
Target Start/End: Original strand, 31605656 - 31605690
Alignment:
| Q |
58 |
cctacatttcaaaaatcaaattagatagaacttat |
92 |
Q |
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| T |
31605656 |
cctacaattcaaaaatcaaattagatagaacttat |
31605690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 31615474 - 31615564
Alignment:
| Q |
1 |
aagtgatattgtttattatacttaccaatcacaattaacctcctgtcccgttttgaccctacatttcaaaaatcaaattagatagaactta |
91 |
Q |
| |
|
||||||||||||| || || |||||| |||||||| | |||| || ||||| | |||||| |||||||||||||||||||| |||||| |
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| T |
31615474 |
aagtgatattgttcatcattcttacctatcacaataagactccagtttcgtttcgtacctacaattcaaaaatcaaattagataaaactta |
31615564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 31619310 - 31619351
Alignment:
| Q |
52 |
tttgaccctacatttcaaaaatcaaattagatagaacttata |
93 |
Q |
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||||| |||||| |||||||| |||||||||||||||||||| |
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| T |
31619310 |
tttgaacctacaattcaaaaaccaaattagatagaacttata |
31619351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 52173603 - 52173506
Alignment:
| Q |
1 |
aagtgatattgtttattatacttaccaatcacaattaacctcctgtcccgttttgaccctacatttcaaaaa-tcaaattagatagaacttatacatt |
97 |
Q |
| |
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||||||||||||| |||| |||||| |||||||| | | |||| | ||||||||| |||||| |||||||| |||||||||||||||||||| |||| |
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| T |
52173603 |
aagtgatattgttagttattcttacctatcacaataagcttcctcttccgttttgaacctacaattcaaaaattcaaattagatagaacttatgcatt |
52173506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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