View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10970_low_1 (Length: 728)
Name: NF10970_low_1
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10970_low_1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 629; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 40 - 728
Target Start/End: Complemental strand, 6969959 - 6969270
Alignment:
| Q |
40 |
gctcgagtgtctatccacttatcagtgaatatgagtcatactccacacttagtcacacatataagaaaatgcagcaaatgagttaaggttatttgggggt |
139 |
Q |
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| T |
6969959 |
gctcgagtgtctatccacttatcagtgaatatgagtcatactccacacttagtcacacatataagaaaatgcagcaaatgagttaaggttatttgggggt |
6969860 |
T |
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| Q |
140 |
aggtattatggatca-tgacttgtttgtattacatcatttcctttttgtttggtcttaggaaagattgaaaaggcatcagataagatgaaatcagatctg |
238 |
Q |
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| T |
6969859 |
aggtattatggatcaatgacttgtttgtattacatcatttcctttttgtttggtcttaggaaagattgaaaaggcatcagataagatgaaatcagatctg |
6969760 |
T |
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| Q |
239 |
gcttttattatnnnnnnnntggtgcttctttatgtgtcattcatttatttannnnnnncctcatgtaaaggccaatatgaaaatgagattttaatttaca |
338 |
Q |
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| T |
6969759 |
gcttttattataaaaaaaatggtgcttctttatgtgtcattcatttatttatttttttcctcatgtaaaggccaatatgaaaatgagattttaatttaca |
6969660 |
T |
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| Q |
339 |
aaagaacctaaagtattactacctgtttgaaatagtacctgaggaggatagatgtgtaaaccatccatattcctcaaagaaatatttataataatctttt |
438 |
Q |
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| T |
6969659 |
aaagaacctaaagtattactacctgtttgaaatagtacctgaggaggatagatgtgtaaaccatccatattcctcaaagaagtatttataataatctttt |
6969560 |
T |
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| Q |
439 |
aatacctaggataaaagctaacatgataaagttttttaagctaaaaactatttatttaatgacttgcagaatagtatggtaatatgctatcagaagaaca |
538 |
Q |
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| T |
6969559 |
aatacctaggataaaagctaacatgataaagttttttaagctaaaaactatttatttaatgacttgcagaatagtatggtaatatgctatcagaagaaca |
6969460 |
T |
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| Q |
539 |
aaacaaaatagggtatcaggtatcaacaaacatataaaagcacacacataaaacttgcaatgcaaactaaacatatttataattcaacattgttaaccat |
638 |
Q |
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| T |
6969459 |
aaacaaaatagggtatcaggtatcaacaaacatataaaagcacacacataaaacttgcactgcaaactaaacatatttataattcaacattgttaaccat |
6969360 |
T |
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| Q |
639 |
ctttttaatggtactaaatattcaacctactttgttataaggcctgaagtacattgtttagtttgtaattcagcataatcaccaacaatg |
728 |
Q |
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| T |
6969359 |
ctttttaatggtactaaatattcaacctactttgttataaggcctgaagtacattgtttagtttgtaattcagcataatcaccaacaatg |
6969270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 9940701 - 9940658
Alignment:
| Q |
39 |
cgctcgagtgtctatccacttatcagtgaatatgagtcatactc |
82 |
Q |
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| T |
9940701 |
cgctcgagtgtctatcaacttatcaatgactatgagtcatactc |
9940658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 33453673 - 33453625
Alignment:
| Q |
39 |
cgctcgagtgtctatccacttatcagtgaatatgagtcatactccacac |
87 |
Q |
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| T |
33453673 |
cgctctagcgtctatccatttatcagtgaatatgagtcatactcaacac |
33453625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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