View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10970_low_15 (Length: 364)

Name: NF10970_low_15
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10970_low_15
NF10970_low_15
[»] chr4 (5 HSPs)
chr4 (154-346)||(30057707-30057900)
chr4 (17-155)||(30057495-30057645)
chr4 (250-344)||(30057125-30057220)
chr4 (238-345)||(10523954-10524062)
chr4 (17-101)||(10523750-10523840)
[»] chr8 (2 HSPs)
chr8 (281-346)||(31882647-31882713)
chr8 (249-346)||(1939338-1939436)
[»] chr1 (3 HSPs)
chr1 (281-346)||(5900167-5900233)
chr1 (281-345)||(52380986-52381051)
chr1 (300-346)||(52381735-52381781)
[»] chr7 (4 HSPs)
chr7 (281-346)||(7744418-7744484)
chr7 (300-346)||(7818489-7818535)
chr7 (303-345)||(26774751-26774793)
chr7 (281-345)||(7817871-7817936)
[»] chr6 (2 HSPs)
chr6 (265-294)||(27786564-27786593)
chr6 (281-345)||(29201393-29201458)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 9e-89; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 154 - 346
Target Start/End: Original strand, 30057707 - 30057900
Alignment:
Q  154 gaagaagattcaccgtaaaagttgtagaacaaaagaaaggaaggacggtggaatttggggagatatggaaagagaagaagcagcgtgtgaacatgtttaa 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  30057707 gaagaagattcaccgtaaaagttgtagaacaaaagaaaggaaggacggtggaatttggggagacagggaaagagaagaagcagcgtgtgaacatgtttaa 30057806  T
Q  254 tttgggggttgtaatctcaaccatgtattttaatctaatggctccta-ttattcttatcattctcacatataattgttattctcatgtgatatg 346  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  30057807 tttgggggttttaatctcagccatgtattttaatctaatggctcctatttattcttatcattctcacatataattgtcattctcatgtgatatg 30057900  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 30057495 - 30057645
Alignment:
Q  17 tcaaccaccagtttgcggcgctcccaacagttccgacgtaaagggtctccgtcgcc------------gccttccaccaccaccagcttcgacacatggt 104  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||  |||||            |||||||||||| |||||||||||||||||||    
T  30057495 tcaaccaccagtttgtggcgctcccaacagttccaacgtaaagggtctctatcgccatcactgtcgtcgccttccaccactaccagcttcgacacatggt 30057594  T
Q  105 gagtatcatttttaccaaagatttttcatctggtagcttattcaatgttga 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30057595 gagtatcatttttaccaaagatttttcatctggtagcttattcaatgttga 30057645  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 344
Target Start/End: Complemental strand, 30057220 - 30057125
Alignment:
Q  250 ttaatttgggggttgtaatctcaaccatgtattttaatctaatggctcctatt-attcttatcattctcacatataattgttattctcatgtgata 344  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||    
T  30057220 ttaatttgggggttttaatctcagccatgtattttaatctaatggctcatattcattcttatcattctcacatataattgtcattctcatgtgata 30057125  T

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Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 238 - 345
Target Start/End: Original strand, 10523954 - 10524062
Alignment:
Q  238 gtgtgaacatgtttaatttgggggttgtaatctcaaccatgtattttaatctaatggctccta-ttattcttatcattctcacatataattgttattctc 336  Q
    ||||||||||||||||||| |||||| ||| |||| |||||||||||||||||||| |||||| |||||||||||||| |||||||||||| | |||||     
T  10523954 gtgtgaacatgtttaatttcggggttttaaactcagccatgtattttaatctaatgtctcctatttattcttatcattttcacatataattatcattctt 10524053  T
Q  337 atgtgatat 345  Q
    |||||||||    
T  10524054 atgtgatat 10524062  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 10523840 - 10523750
Alignment:
Q  17 tcaaccaccagtttgcggcgctcccaacagttccgacgtaaagggtctcc------gtcgccgccttccaccaccaccagcttcgacacat 101  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||| ||||||||| ||||||    
T  10523840 tcaaccaccggtttgcggcgctcccaacagttccgacgtaaagggtctccatcgctgtcgccgccttccaccactaccagcttcaacacat 10523750  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 346
Target Start/End: Complemental strand, 31882713 - 31882647
Alignment:
Q  281 ttttaatctaatggctcctatt-attcttatcattctcacatataattgttattctcatgtgatatg 346  Q
    |||||||||| ||| || |||| ||||||||||||||||||||||| | | ||||||||||||||||    
T  31882713 ttttaatctagtggttcatatttattcttatcattctcacatataactatcattctcatgtgatatg 31882647  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 346
Target Start/End: Original strand, 1939338 - 1939436
Alignment:
Q  249 tttaatttgggggttgtaatctcaaccatgtattttaatctaatggctcctat-tattcttatcattctcacatataattgttattctcatgtgatatg 346  Q
    |||||||| || ||| ||||||  ||||| ||||||||||||| ||||  ||  ||| ||||||||||||| ||| |||||  ||||||||||||||||    
T  1939338 tttaatttaggagttttaatctggaccatctattttaatctaagggctgataagtatacttatcattctcatataaaattgacattctcatgtgatatg 1939436  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 5900167 - 5900233
Alignment:
Q  281 ttttaatctaatggctcctatt-attcttatcattctcacatataattgttattctcatgtgatatg 346  Q
    |||||||||| |||||  |||| ||||||||||||||||||||||| | | ||||||||||||||||    
T  5900167 ttttaatctagtggcttgtatttattcttatcattctcacatataactatcattctcatgtgatatg 5900233  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 52381051 - 52380986
Alignment:
Q  281 ttttaatctaatggctcctatt-attcttatcattctcacatataattgttattctcatgtgatat 345  Q
    ||||||| | ||||||| |||| |||| ||||||||||| |||||||||| |||||||||||||||    
T  52381051 ttttaatatgatggctcatattcattcctatcattctcatatataattgtcattctcatgtgatat 52380986  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 52381735 - 52381781
Alignment:
Q  300 attattcttatcattctcacatataattgttattctcatgtgatatg 346  Q
    ||||||| ||||||||| | |||||||||| ||||||||||||||||    
T  52381735 attattcctatcattcttatatataattgtcattctcatgtgatatg 52381781  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 7744418 - 7744484
Alignment:
Q  281 ttttaatctaatggctcctatt-attcttatcattctcacatataattgttattctcatgtgatatg 346  Q
    |||||||||||||| | ||||| ||||| ||||||||||||||||| |   ||||||||||||||||    
T  7744418 ttttaatctaatggtttctatttattctcatcattctcacatataactaccattctcatgtgatatg 7744484  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 7818489 - 7818535
Alignment:
Q  300 attattcttatcattctcacatataattgttattctcatgtgatatg 346  Q
    ||||||| ||||||||| | |||||||||| ||||||||||||||||    
T  7818489 attattcctatcattcttatatataattgtcattctcatgtgatatg 7818535  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 26774793 - 26774751
Alignment:
Q  303 attcttatcattctcacatataattgttattctcatgtgatat 345  Q
    ||||| |||||||||||||| ||| ||||||||||||||||||    
T  26774793 attctaatcattctcacataaaatagttattctcatgtgatat 26774751  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 7817936 - 7817871
Alignment:
Q  281 ttttaatctaatggctcctatt-attcttatcattctcacatataattgttattctcatgtgatat 345  Q
    ||||||||  ||||||| |||| |||| ||||||||||| |||||||||| ||||| |||||||||    
T  7817936 ttttaatccgatggctcatattcattcctatcattctcatatataattgtcattcttatgtgatat 7817871  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 294
Target Start/End: Original strand, 27786564 - 27786593
Alignment:
Q  265 taatctcaaccatgtattttaatctaatgg 294  Q
    ||||||||||||||||||||||||||||||    
T  27786564 taatctcaaccatgtattttaatctaatgg 27786593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 345
Target Start/End: Original strand, 29201393 - 29201458
Alignment:
Q  281 ttttaatctaatggctcctatt-attcttatcattctcacatataattgttattctcatgtgatat 345  Q
    ||||||| | |||||||||||| ||||||| |||||||||||| |||  | |||||||||||||||    
T  29201393 ttttaatttgatggctcctattcattcttagcattctcacataaaatattcattctcatgtgatat 29201458  T

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