View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10970_low_17 (Length: 340)
Name: NF10970_low_17
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10970_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 36651494 - 36651175
Alignment:
| Q |
1 |
cgcttgagaaagaaagtcttagtcacgagttcattttgaccgaaagctatctcatgaaaagctccattcagttagagactacatctgcaattgtggcaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36651494 |
cgcttgagaaagaaagtcttagtcacgagttcattttgaccgaaagctatctcatgaaaagctccattcagttagagactacatctgcaattgtggcaag |
36651395 |
T |
|
| Q |
101 |
gtctggaatgaagtcacgcaaaaccattgaatatctgtacaagaaattgatgagtgtaaatggggtgtatgaggctgaattgaattacatacatcagcgt |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36651394 |
atctggaatgaagtcacgcgaaaccattgaatatctgtacaagaaattgatgagtgtaaatggggtgtatgaggctgaattgaattacatacatcagcgt |
36651295 |
T |
|
| Q |
201 |
ctcctcgttaaaactgacatgtaacatgtgttcctcaagggatatctaatggttatgagttatagcttggcggttgtgtctaatgtggtggagtgtggat |
300 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
36651294 |
ctcctcgttaaaaccgacatgaaacatgtgttcctcaagggatatctaatggttatgagttatagcttggcagttgcgtctaatgtggtggagtgtggat |
36651195 |
T |
|
| Q |
301 |
ccaatgataacacttgtgtg |
320 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
36651194 |
gcaatgatatcacttgtgtg |
36651175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 264
Target Start/End: Original strand, 36642181 - 36642257
Alignment:
| Q |
188 |
catacatcagcgtctcctcgttaaaactgacatgtaacatgtgttcctcaagggatatctaatggttatgagttata |
264 |
Q |
| |
|
||||||| |||||||||||| || | || ||||| |||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
36642181 |
catacattagcgtctcctcgctagacctaacatgaggcatgtgttcctcaaaggatatctcatggttatgagttata |
36642257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University