View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10970_low_19 (Length: 298)

Name: NF10970_low_19
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10970_low_19
NF10970_low_19
[»] chr7 (1 HSPs)
chr7 (1-291)||(30808232-30808522)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 30808232 - 30808522
Alignment:
Q  1 caattttcagtcaaaagattatgggaccagtgcagaactctttgaaaaatcaatgctatatattccacatgacacagagaacagaatacttcgagccaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30808232 caattttcagtcaaaagattatgggaccagtgcagaactctttgaaaaatcaatgctatatattccacatgacacagagaacagaatacttcgagccaag 30808331  T
Q  101 ggctttagagttttgtgtctctgccaccttggtctcttacaactggatcgtgccaaagaatacattgacgaggctgagaaggtattattgaaaattagaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30808332 ggctttagagttttgtgtctctgccaccttggtctcttacaactggatcgtgccaaagaatacattgacgaggctgagaaggtattattgaaaattagaa 30808431  T
Q  201 ttttgaatttgtagcattaactttcactcaaataagaaatattaaccctgttttccatctttgcagcttgagcccaacattgtctctgctt 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||    
T  30808432 ttttgaatttgtagcattaactttcactcaaataagaaatattaaccctgttttccatctttgcagcttgagcccaacgttgtctgtgctt 30808522  T

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