View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10970_low_21 (Length: 290)
Name: NF10970_low_21
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10970_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 30961710 - 30961421
Alignment:
| Q |
1 |
taagaggattagtgaagagtaaaggaataattacttttgttgaagagagggtaatgtgaaggcatcaacctctaatcaaaaggactatgagaaggaagag |
100 |
Q |
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| T |
30961710 |
taagaggattagtgaagattaaaggaataattacttttgttgaagagagggtaatgtgaaggcatcaacctctaatcaaaaggactatgagaaggaagag |
30961611 |
T |
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| Q |
101 |
gatgaggctcctagggagtataggagtagtaggaggaatggaggaagacttagaaattatataatcaagaaaggatagggaagaaaaataactttggaag |
200 |
Q |
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| T |
30961610 |
gatgaggctcctagggagtataggagtagtaggaggaatggaggaagacttagaaattatataatcaagaaaggatagggaggaaaaataactttggaag |
30961511 |
T |
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| Q |
201 |
aaaaagaaacttgaaattcctaatttttaagggaaggttgatctagaaacatgcttacattgagagcaataagtggaacaaaatttagtt |
290 |
Q |
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| T |
30961510 |
aaaaagaaacttgaaattcctaatttttaaaggaaggttgatctagaaacatgcttacattgagagcaataagtggaacaaaatttagtt |
30961421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 29 - 247
Target Start/End: Original strand, 38790437 - 38790667
Alignment:
| Q |
29 |
aattacttttgttgaagagagggtaatgtgaaggcatcaacctctaa-tcaaaaggactat--gagaaggaagaggatgaggctcctagggagtatagga |
125 |
Q |
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| T |
38790437 |
aattactttggttaaagaaagggtaatgtgaagtcatcaacctccaagtcaaaaggactatatgaggaggaagatgatgagactccaagggagtat--ga |
38790534 |
T |
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| Q |
126 |
gtagtaggaggaatggaggaagacttagaaattatataatcaagaaaggat-------------agggaagaaaaataactttggaagaaaaagaaactt |
212 |
Q |
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| T |
38790535 |
ggcataggagacattgagaaagacttaaaaac-atgtaatcaagaaaggatgattagggtctctagggaggaagaataactttggaagaaaaagaaactt |
38790633 |
T |
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| Q |
213 |
gaaattcctaatttttaagggaaggttgatctaga |
247 |
Q |
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| T |
38790634 |
-aaattccttacttttaagggaaggttgatataga |
38790667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 290
Target Start/End: Original strand, 38784324 - 38784482
Alignment:
| Q |
138 |
atggaggaagacttagaaattatataatcaagaaagga----tagggaagaaaaataactttggaagaaaaagaaacttgaaattcctaatttttaaggg |
233 |
Q |
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| T |
38784324 |
atggaggaagacttagaaac-atgtaatcaacaaaggaggattagagaggaagaataactttggaagaacaagaaatttaaaattcctaaattttaagga |
38784422 |
T |
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| Q |
234 |
aaggttgatct--agaaacatgcttacattgagagcaataagtggaacaaa-atttagtt |
290 |
Q |
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| T |
38784423 |
aaggttgatctagagaaacatacttatattcagagctaaaattggaacaaatatttagtt |
38784482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 290
Target Start/End: Complemental strand, 38742132 - 38742044
Alignment:
| Q |
205 |
agaaacttgaaattcctaatttttaagggaaggttgatct--agaaacatgcttacattgagagcaataagtggaacaaa-atttagtt |
290 |
Q |
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| T |
38742132 |
agaaacttgaaattcttaatttttaagggaatgttgatttagagaaacatacttaaattcagagctaaaagtggaacaaatatttagtt |
38742044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 242
Target Start/End: Original strand, 34081577 - 34081629
Alignment:
| Q |
190 |
aactttggaagaaaaagaaacttgaaattcctaatttttaagggaaggttgat |
242 |
Q |
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| T |
34081577 |
aactttggaagaaaaagaaacttaaaattcctaatttccaaaggaaggttgat |
34081629 |
T |
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