View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10970_low_25 (Length: 266)
Name: NF10970_low_25
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10970_low_25 |
 | |
|
| [»] scaffold0095 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0095 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 27424 - 27676
Alignment:
| Q |
1 |
taaggtttcaagtttcaactttgaatgagcaacttgagttgaatcttctttggcctttgaattggatcatcac--nnnnnnnnnnnnnnnnnnngagtta |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27424 |
taaggtttcaagtttcaactttgaatgagcaacttgagttgaatcttctttggcctttgaattggatcatcactatatatatatataataatatgagtta |
27523 |
T |
|
| Q |
99 |
tgaccttttatgcgcgttcnnnnnnnnnnnnagattaattttcgctcactatcg-catacaatatttct-atattttaccacgttaatcaattacaaact |
196 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
27524 |
tgaccttttatgcgcgttctttttgttttttagattaattttcactcactatcgccatacaatatttctaatattttaccacgttaatcaattacaaact |
27623 |
T |
|
| Q |
197 |
a--nnnnnnnactaaattatagtctccttgaaacaaattgattacatggtgcc |
247 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27624 |
atttttttttactaaattatagtctccttgaaacaaattgcttacatggtgcc |
27676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 39403466 - 39403718
Alignment:
| Q |
1 |
taaggtttcaagtttcaactttgaatgagcaacttgagttgaatcttctttggcctttgaattggatcatcac--nnnnnnnnnnnnnnnnnnngagtta |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39403466 |
taaggtttcaagtttcaactttgaatgagcaacttgagttgaatcttctttggcctttgaattggatcatcactatatatatatataataatatgagtta |
39403565 |
T |
|
| Q |
99 |
tgaccttttatgcgcgttcnnnnnnnnnnnnagattaattttcgctcactatcg-catacaatatttct-atattttaccacgttaatcaattacaaact |
196 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39403566 |
tgaccttttatgcgcgttctttttgttttttagattaattttcactcactatcgccatacaatatttctaatattttaccacgttaatcaattacaaact |
39403665 |
T |
|
| Q |
197 |
a--nnnnnnnactaaattatagtctccttgaaacaaattgattacatggtgcc |
247 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39403666 |
atttttttttactaaattatagtctccttgaaacaaattgcttacatggtgcc |
39403718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University