View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10970_low_29 (Length: 251)
Name: NF10970_low_29
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10970_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 44351641 - 44351534
Alignment:
| Q |
5 |
cgagagagaagaagagttgttctaattc---ttcacatattgtgtatgatgaatttcgcactgctacaatttcaagtttctgattcaacttgtttgctgc |
101 |
Q |
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| T |
44351641 |
cgagagagaagaagagttgttctgattcaacttcacatattgtgtatgatgaatttcgcactgctacaatttcaagtttctgattcaacttgtttgctgc |
44351542 |
T |
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| Q |
102 |
tgcctcag |
109 |
Q |
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|||||||| |
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| T |
44351541 |
tgcctcag |
44351534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 44351441 - 44351390
Alignment:
| Q |
200 |
ttaaaatcacccaccatgtcatattatttgccacgtcacctctttcaatggt |
251 |
Q |
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| T |
44351441 |
ttaaaatcacccaccatgtcatattatttgccacgtcacctctttcaatggt |
44351390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 9682884 - 9682925
Alignment:
| Q |
5 |
cgagagagaagaagagttgttctaattcttcacatattgtgt |
46 |
Q |
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| T |
9682884 |
cgagagagaagaagagttgttctgattcttcacatatagtgt |
9682925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 7909654 - 7909614
Alignment:
| Q |
5 |
cgagagagaagaagagttgttctaattcttcacatattgtg |
45 |
Q |
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||||||||||||||||||||||| |||||||| |||||||| |
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| T |
7909654 |
cgagagagaagaagagttgttctgattcttcagatattgtg |
7909614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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