View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10970_low_3 (Length: 669)

Name: NF10970_low_3
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10970_low_3
NF10970_low_3
[»] chr3 (1 HSPs)
chr3 (36-652)||(40156820-40157453)


Alignment Details
Target: chr3 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 36 - 652
Target Start/End: Complemental strand, 40157453 - 40156820
Alignment:
Q  36 gaaagatgttggagtccgttgttaattgcactatttgtgtagaattcacttttgaagaatttacccattgaagtttttaacactctgttattgctcctgt 135  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||    
T  40157453 gaaagatgttggagtccgttgttaatt-cactatttgtgtagaattcacttttgaagaatttacccatggaagtttttaacactccgttattgctcctgt 40157355  T
Q  136 accaagcaagtattctactactagcacagagtccatagttcaggagtaaaaatgagcgggttaattgaatatacaatgaaacaagttttttgcacccaaa 235  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40157354 accaagcaagtattctactactagcatagagtccatagttcaggagtaaaaatgagcgggttaattgaatatacaatgaaacaagttttttgcacccaag 40157255  T
Q  236 catgtgtagcagttagtccatgtttggtgtcacgtcggggaaaattgttttgtagggtcagtactgaggaactaattagcacgctgaatattattatgcc 335  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40157254 catgtgtagcagttagtccatgtttggtgtcacatcggggaaaattgttttgtagggtcagtactgaggaactaataagcacgctgaatattattatgcc 40157155  T
Q  336 caggaaactacaattagtcaaaatgataagtaccagcacttttactgcatgaacagaacaatttgtttgattaacgctgttcttgcttgactgttgtgag 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  40157154 caggaaactacaattagtcaaaatgataagtaccagcacttttactacatgaacataacaatttgtttgattaacgctgttcttgcttgactgttgtgag 40157055  T
Q  436 tcgttgaccctcaaatagtaaactagcactagcattactcataacaagcaattaaga---tcttttttccctttcaaaagagtagcgccttccttctatc 532  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||    
T  40157054 tcattgaccctcaaatagtaaactagcactagcattactcataacaagcaattaagatcttcttttttccctttcaaaagagtagcgccttccttctatc 40156955  T
Q  533 ctaaacaccattaggttcccattttaatgattacacgtgcttcatcttgttgttgatgtgagaatgca---------------ctatttttcccctttca 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||| ||||    
T  40156954 ctaaacaccattaggttcccattttaatgattacacgtgcttcatcttgttgttgatgtgagaatgcactattacatacatagctatttttcccccttca 40156855  T
Q  618 aaagtttcaccaccaaagataatcatagtccgact 652  Q
    |||| ||||||||||||||||||||||||||||||    
T  40156854 aaaggttcaccaccaaagataatcatagtccgact 40156820  T

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