View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10970_low_4 (Length: 595)
Name: NF10970_low_4
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10970_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Original strand, 45681134 - 45681708
Alignment:
| Q |
1 |
ttctgattacaactactgtttgacctttgactaagttttctcatactgtttggaatatttagctgcctgatcctaaaaaatataacatctctacttctaa |
100 |
Q |
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| T |
45681134 |
ttctgattacaactactgtttgacctttgactaagttttctcatactgtttggaatatttagctgcctgatcctaaaaaatataacatctctacttctaa |
45681233 |
T |
|
| Q |
101 |
aaatcttcttgttcacaaggtcccaaatcgctaatcaaacttgtacctttgagatccaagatataaatcgactttttggtctctgcatcggacacaaatt |
200 |
Q |
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| T |
45681234 |
aaatcttcttgttcacaaggtcccaaatcgctaatcaaacttgtatctttgagatccaagata--aatcgactttttggtctctgcatcggacacaaatt |
45681331 |
T |
|
| Q |
201 |
attcataaaatggaggtactttttatttacaaggcgttatcagtttttattgtctttcatttttccatcggtgtttgattcaccatgtacaacattagcc |
300 |
Q |
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| T |
45681332 |
attcataaaatggaggtactttttatttacaaggcgttatcagtttttattgtctttcatttttccatcggtgtttgattcaccatgtacaacattagcc |
45681431 |
T |
|
| Q |
301 |
tcacctttgcattatgcataatctgtcgagtaatgggccaagcaacaaacaatagagaatgaacatagcaccatattcttaacaaaatcaatatggcttt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45681432 |
tcacctttgcattatgcataatctgtcgagtaatgggccaagcaacaaacaatagagaatgaacatagcaccatattcttaacaaaatcaatatggcttt |
45681531 |
T |
|
| Q |
401 |
tctatatatgcatgttctcttctatcatcttcatttagcttattttgagctaatgtgtactttttcatcactcacacttgacagacagttaggcttcccc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45681532 |
tctatatatgcatgttctcttctatcatcttcatttagcttattttgaactaatgtgtactttttcatcactcacacttgacagacagttaggcttcccc |
45681631 |
T |
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| Q |
501 |
ctaggttgaagtctgagtactatactttctctccaaaaattgggtcattacttaatatctctccctctgggtaaaac |
577 |
Q |
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| T |
45681632 |
ctaggttgaagtctgagtactatgctttctctccaaaaattgggtcattacttaatatctctccctctgggtaaaac |
45681708 |
T |
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