View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10970_low_40 (Length: 211)
Name: NF10970_low_40
Description: NF10970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10970_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 33858543 - 33858366
Alignment:
| Q |
15 |
cacagagaaataaatatagatataataaggtattattaacctggaaaaccatcgaaacatagtaatcaatagcgctatagcggcaagaaaccgctacgga |
114 |
Q |
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| T |
33858543 |
cacagagaaataaatatagatatactaaggtattattagcctggaaaaccatcgaaacatagtaatcaatagcgctatagcggcaagaaaccgctacgga |
33858444 |
T |
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| Q |
115 |
atctatcttcctatgttctttgttctcttttttagttcctctgttctttggtcttttggattaatgttttgattaaga |
192 |
Q |
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| T |
33858443 |
atctatcttcctatgttctttgttctcttttttagttcctctgttctttggtcttttggattaatgttttgattaaga |
33858366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 33922380 - 33922557
Alignment:
| Q |
15 |
cacagagaaataaatatagatataataaggtattattaacctggaaaaccatcgaaacatagtaatcaatagcgctatagcggcaagaaaccgctacgga |
114 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33922380 |
cacagagaaataaatatagatatactaaggtattattagcctggaaaaccatcgaaacatagtaatcaatagcgctatagcggcaagaaaccgctacgga |
33922479 |
T |
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| Q |
115 |
atctatcttcctatgttctttgttctcttttttagttcctctgttctttggtcttttggattaatgttttgattaaga |
192 |
Q |
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| T |
33922480 |
atctatcttcctatgttctttgttctcttttttagttcctctgttctttggtcttttggattaatgttttgattaaga |
33922557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 33185295 - 33185219
Alignment:
| Q |
116 |
tctatcttcctatgttctttgttctcttttttagttcctctgttctttggtcttttgga-ttaatgttttgattaaga |
192 |
Q |
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| T |
33185295 |
tctatcttcctctattctttgttctccttat-agttcctctgttctttggtcttttggatttaatgttttgattaaga |
33185219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 43853990 - 43854034
Alignment:
| Q |
115 |
atctatcttcctatgttctttgttctcttttttagttcctctgttc |
160 |
Q |
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| T |
43853990 |
atctatcttcctctgttctttgttctc-tttttagttcctcggttc |
43854034 |
T |
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